PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre07.g341800.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family NF-YB
Protein Properties Length: 279aa    MW: 28125.3 Da    PI: 4.1506
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre07.g341800.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB53.27.2e-179110397
               NF-YB   3 eqdrflPianvsrimkkvlP....anak...iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                         e d++lP a + ri+k  l      +ak   + kda   + ec   fis ++s ++d cq+++r t+n+dd+l al +l f + v pl+  
  Cre07.g341800.t1.2   9 EADAELPRALIRRIVKSKLAllagDDAKefsVNKDALTALAECTKVFISCLASTSNDICQEKRRSTVNADDVLTALHDLDFPELVGPLREQ 99 
                         7899************988622223454555999********************************************************* PP

               NF-YB  87 lkkyrelegek 97 
                         l+ ++e+ +e+
  Cre07.g341800.t1.2 100 LEAFKEAAKER 110
                         ******98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.1E-324130IPR009072Histone-fold
SuperFamilySSF471134.19E-2511133IPR009072Histone-fold
PfamPF008082.8E-111284IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEAQIEKPEA DAELPRALIR RIVKSKLALL AGDDAKEFSV NKDALTALAE CTKVFISCLA  60
STSNDICQEK RRSTVNADDV LTALHDLDFP ELVGPLREQL EAFKEAAKER NKNRQQAGGN  120
KKRKSGAAAD EPPPVAPRSS LQAAPAEAAP EAEDGSGGAG PSHADDDDDG ALVPGTGMGI  180
GGAGGFGEDG LGGIGLGVGM GVGVGLDAPG LALSPGGLAM GGAEAGAVAA ADVAAHPQQQ  240
EAAGAAAQQQ QRAVEEVAPE AVVEEEVQVE DMLVDALP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.3771e-120normal conditions
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre07.g341800.t1.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DKK90.0A0A2K3DKK9_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP34531313
Representative plantOGRP78621516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-21nuclear factor Y, subunit B11