PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre05.g243000.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family ARR-B
Protein Properties Length: 942aa    MW: 92853.4 Da    PI: 6.7117
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre05.g243000.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like49.87.5e-16221259140
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkg 40 
                         k+r++W+ e+H++Fv+av+qL G++kA+Pk+ile+m+v+g
  Cre05.g243000.t1.1 221 KARVVWSVEMHQQFVNAVNQL-GIDKAVPKKILEIMGVDG 259
                         68*******************.****************98 PP
2Response_reg81.13.5e-27281361109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         +l+vdD+pl +++++q+l+k  y ev+++++++ al++l++k+  +Dl+l D+ mp+mdG++ll+     e++lp+i+++++g+ + +l+ 
  Cre05.g243000.t1.1  28 LLVVDDDPLCLKVVEQMLRKCSY-EVTVCSNATTALNILRDKNteYDLVLSDVYMPDMDGFRLLELVGL-EMDLPVIMMSSNGDTSNVLRG 116
                         599********************.***************998889*******************87754.558****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +  Ga d+l Kp+  eel++
  Cre05.g243000.t1.1 117 VTHGACDYLIKPVRLEELRN 136
                         *****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.12E-3725153IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.7E-4325170No hitNo description
SMARTSM004484.3E-3226138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.27627142IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2329136IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.68E-2729141No hitNo description
Gene3DG3DSA:1.10.10.604.8E-15219259IPR009057Homeodomain-like
SuperFamilySSF466899.68E-8220259IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-13221259IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 942 aa     Download sequence    Send to blast
MDSQGVKLEE HPGHTGGHWQ GFPAGLRLLV VDDDPLCLKV VEQMLRKCSY EVTVCSNATT  60
ALNILRDKNT EYDLVLSDVY MPDMDGFRLL ELVGLEMDLP VIMMSSNGDT SNVLRGVTHG  120
ACDYLIKPVR LEELRNLWQH VVRRRRQHAQ EIDSDEQSQE RDEDQTRNKR KADAAGVTGD  180
QCRLNGSGSG GAAGPGSGGG AGGMTDEMLM MSGGENGSNK KARVVWSVEM HQQFVNAVNQ  240
LGIDKAVPKK ILEIMGVDGS AGRLADTSGR DVCGTVYRLY LKRVSGVTPS GHHHNAAHKS  300
NKPSPHTTPP PPALPGQAGT HPANQATAIP PPPQPGSGTA AGAGAAAAGT GGGAAAANGH  360
AATTGAGTPG AAPGAGGGVG GTGAGGLGSG PDGAAAAAGP GPGAAVPGGL GGLPLPPGAG  420
PGPGPGGFGG PSPPPPPHPA ALLANPMAAA VAGLNQSLLN AMGSLGVGVG GMSPLGPVGP  480
LGPLGGLPGL PGMQPPPLGM GGLQPGMGPL GPLGLPGMGG LPGLPGMNPM ANLMQGMAAG  540
MAAANQMNGM GGHMGGHMGG MNGPMGALAG MNGLNGAMMG GLPGMGGPQN MFQAAAAAAA  600
QQQQQQQEQQ HAMMQQAAAG LLASQQQQQQ QQQQQQQQQA LQQQQQQGMA VSPPGPHNAT  660
PNGQLHTHPQ AHHPHQHGLH AHAHPHQHLN TAPAGALGLS PPQPPAGLLS ASGLSSGPDG  720
SGLGSGVGGL LDGLQQHPHH PQLQLAGSLG TGGTGRSSGA AGRGSLDLPA DLMGMALLDF  780
PPVPVPGGAD VGMAGAGGGA AGAHHHGHQG HQGIGGGAGV GIAGGVGCGV PAAAHGLEPA  840
ILMDDPADLG AVFSDVMYGT PGGGGVPGGV PGGGVGLGLG AGQVPSGPAG AGGLHSHHHQ  900
HHHHQHHLGH VVPVGGVDPL AGDAAKMAMN DDDFFNFLLK N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nhz_A4e-12271337111Two component system transcriptional regulator mtrA
3nhz_B4e-12271337111Two component system transcriptional regulator mtrA
3nhz_C4e-12271337111Two component system transcriptional regulator mtrA
3nhz_D4e-12271337111Two component system transcriptional regulator mtrA
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre05.g243000.t1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DSF40.0A0A2K3DSF4_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP12201516
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.12e-63response regulator 14