PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre05.g240650.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C2H2
Protein Properties Length: 775aa    MW: 82143.9 Da    PI: 4.5981
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre05.g240650.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-05312336123
                         EEETTTTEEESSHHHHHHHHHH..T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                         ++C  C+k+F++  +Lk+H r+  H
  Cre05.g240650.t1.2 312 FECVVCDKVFRSDKQLKNHERSkkH 336
                         89*****************998666 PP
2zf-C2H212.80.00036747765321
                         ETTTTEEESSHHHHHHHHH CS
             zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                         C  Cg+ F ++s+L +Hi 
  Cre05.g240650.t1.2 747 CLVCGEKFGSRSQLFKHIA 765
                         99***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465652.62E-26476IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1103.8E-29488IPR001623DnaJ domain
SMARTSM002713.3E-25665IPR001623DnaJ domain
PROSITE profilePS5007620.312773IPR001623DnaJ domain
CDDcd062573.36E-21762IPR001623DnaJ domain
PfamPF002265.4E-25870IPR001623DnaJ domain
PRINTSPR006251.3E-17927IPR001623DnaJ domain
PRINTSPR006251.3E-172742IPR001623DnaJ domain
PRINTSPR006251.3E-174565IPR001623DnaJ domain
PROSITE patternPS0063605069IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.75E-14302357No hitNo description
PROSITE profilePS5015710.388312341IPR007087Zinc finger, C2H2
SMARTSM003550.017312336IPR015880Zinc finger, C2H2-like
PfamPF121712.8E-10312336IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280314336IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099745774IPR007087Zinc finger, C2H2
SMARTSM003551.7745769IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280747769IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MAPKQRCLYE VLEVAREAED GEIKKAYRKM ALMWHPDKNA HRAEEAAERF KEIQNAYEIL  60
SDKHERAWYD DHRDQIMRSG ERHQAGGGSG GYEAGGERPA EDEEIFSFFS TSCFSGFGDG  120
PKGFYGVYAE VFANLAKREQ EAWEAREPGS DSDGDGEPPS FPAFGTSESD AAAVAAFYAA  180
WSTYTTCRSF AWADIYNTAA APDRQIRRRM EEENRRKRRK ARRDWMDTIR ELVAFVKKRD  240
KRVAKAQAEE AARRAQREAE DAERRKRERE ERLARAAAYE EADWVRNTPS HHHHGEEDGE  300
GSEEDEAEEE VFECVVCDKV FRSDKQLKNH ERSKKHAEAV AALRAVLEEE EAAILDLDLD  360
LDGSGAGAAS VAGGGGGGGG GGGKGGRGGS GMDGAATGGG GGSKKKKKAK RRAQKAAGGS  420
AMQSRDAGGE DEEAEEAEGE EEAEEEARAA PAPAPASAAA GKGKGKAQQA KGKAAAPPPP  480
PPPPKSESEE EEEEEEEEQD EDDDAMLARM MAAHARVGGG KQQRQSKGGR GGKQQQQEDE  540
KGEEEEEDEE EEEAEAPAAR KAEAAADIED DEEEEDDEDE DAMLARMMRS KQAAAASGPA  600
ARKGGGGGGK KAAPAPAVES DEEDDEQDEE EEEEAPPAAS SSGRQQQQQP AAPKQAQAGG  660
GKVAKGGAAA AAKPAASKPA PASKRGGGGG GGAATVGVPA GSGFVASDDD SDEEDGSQAT  720
TKKEKRKAKA AARKAAATAP GPGQTACLVC GEKFGSRSQL FKHIADTGHA ALKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lgw_A4e-17793393DnaJ homolog subfamily B member 2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214222RRKRRKARR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre05.g240650.t1.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DT640.0A0A2K3DT64_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP443077
Representative plantOGRP354177
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-23DNAJ heat shock N-terminal domain-containing protein