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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre04.g216204.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | bHLH | ||||||||
Protein Properties | Length: 469aa MW: 48029.9 Da PI: 5.3997 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.2e-13 | 217 | 283 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC..................TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas...............kapskKlsKaeiLekAveYIksLq 55 +h+ +E++RRdriNs ++eLrel+P++ ++ + K +L +++ +k+Lq Cre04.g216204.t1.1 217 SHSTVEKQRRDRINSLIDELRELVPPQQrggangaaaaaandaGGLEARRPKHVVLADTIQLLKHLQ 283 7*************************777************99999999****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.589 | 213 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-10 | 215 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.87E-7 | 215 | 245 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.8E-11 | 216 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-10 | 217 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-7 | 219 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 2.0E-9 | 378 | 441 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 1.4E-6 | 382 | 440 | No hit | No description |
PROSITE profile | PS51671 | 10.379 | 382 | 461 | IPR002912 | ACT domain |
CDD | cd04873 | 1.15E-8 | 383 | 446 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MNEALDFGIG DSQYVFTDLE LNELLGVIER KAAGEAEPDA LDFLRATDGN GLALQFQPRS 60 QKDNGSGCSL EQSAVAAAVK LEDSALSSAL ASPVDTPALT GVADPASLYG SGAEISIMPM 120 PHAAAASAPT SLHAYTLPGT AGHAALVGSS PALVSTLVAA ATAAQQAQHN AQLAAAAAGC 180 LHVHAPLQLA RFASVPAPPG KAMSMSMSMA EPKGQISHST VEKQRRDRIN SLIDELRELV 240 PPQQRGGANG AAAAAANDAG GLEARRPKHV VLADTIQLLK HLQLKLSMGA LEVGGATNGC 300 YVNGNGGYCN GGGGGGSGGA VGRLGSGFNG EEDTANSEGK ASKGSSSHEE MEVGGAPQMP 360 HIPCQMTQMS GVTVERGPDC YYVQVKCRDR KGLLSDIINA LRQLPLEIRT AAVTTTNGTV 420 RDVFEVKLDD PGLSPEDVQN LVHDALFQSH LLAAQSESLA AAGKRPRA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre04.g216204.t1.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001698686.1 | 1e-166 | potential DNA binding protein | ||||
TrEMBL | A0A2K3DTM7 | 0.0 | A0A2K3DTM7_CHLRE; Uncharacterized protein | ||||
STRING | EDO99368 | 1e-165 | (Chlamydomonas reinhardtii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3455 | 10 | 13 |
Link Out ? help Back to Top | |
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Phytozome | Cre04.g216204.t1.1 |