PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre04.g216200.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family bHLH
Protein Properties Length: 469aa    MW: 48029.9 Da    PI: 5.3997
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre04.g216200.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.2e-13217283455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC..................TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkas...............kapskKlsKaeiLekAveYIksLq 55 
                         +h+ +E++RRdriNs ++eLrel+P++                ++   +  K  +L  +++ +k+Lq
  Cre04.g216200.t1.2 217 SHSTVEKQRRDRINSLIDELRELVPPQQrggangaaaaaandaGGLEARRPKHVVLADTIQLLKHLQ 283
                         7*************************777************99999999****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.589213282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-10215289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.87E-7215245No hitNo description
Gene3DG3DSA:4.10.280.104.8E-11216284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-10217283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-7219288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.0E-9378441No hitNo description
Gene3DG3DSA:3.30.70.2601.4E-6382440No hitNo description
PROSITE profilePS5167110.379382461IPR002912ACT domain
CDDcd048731.15E-8383446No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MNEALDFGIG DSQYVFTDLE LNELLGVIER KAAGEAEPDA LDFLRATDGN GLALQFQPRS  60
QKDNGSGCSL EQSAVAAAVK LEDSALSSAL ASPVDTPALT GVADPASLYG SGAEISIMPM  120
PHAAAASAPT SLHAYTLPGT AGHAALVGSS PALVSTLVAA ATAAQQAQHN AQLAAAAAGC  180
LHVHAPLQLA RFASVPAPPG KAMSMSMSMA EPKGQISHST VEKQRRDRIN SLIDELRELV  240
PPQQRGGANG AAAAAANDAG GLEARRPKHV VLADTIQLLK HLQLKLSMGA LEVGGATNGC  300
YVNGNGGYCN GGGGGGSGGA VGRLGSGFNG EEDTANSEGK ASKGSSSHEE MEVGGAPQMP  360
HIPCQMTQMS GVTVERGPDC YYVQVKCRDR KGLLSDIINA LRQLPLEIRT AAVTTTNGTV  420
RDVFEVKLDD PGLSPEDVQN LVHDALFQSH LLAAQSESLA AAGKRPRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre04.g216200.t1.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001698686.11e-166potential DNA binding protein
TrEMBLA0A2K3DTM70.0A0A2K3DTM7_CHLRE; Uncharacterized protein
STRINGEDO993681e-165(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP34551013