PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre03.g198800.t1.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | MYB_related | ||||||||
Protein Properties | Length: 456aa MW: 46332.8 Da PI: 8.256 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.3 | 3.4e-13 | 35 | 80 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++W++eE+ ++ + k lG+g+W+ I++ + +Rt+ q+ s+ qk+ Cre03.g198800.t1.2 35 QPWSEEEHRAFLAGLKSLGKGSWRQISQQFVPTRTPTQVASHAQKH 80 79****************************99************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.753 | 29 | 85 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.22E-15 | 31 | 84 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-10 | 33 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-12 | 33 | 80 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.3E-13 | 34 | 83 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.0E-11 | 35 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.35E-9 | 36 | 81 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MSGEPSPLEE QPDLDNSEDL HNSSDAANAS SRKGQPWSEE EHRAFLAGLK SLGKGSWRQI 60 SQQFVPTRTP TQVASHAQKH FMRVAGATKR KSRFTALETE VLPPAKIAHV DSRQHGSEQT 120 EQLEPQPQAQ ARQPAMAPQA QQAGAPAASQ FGPMAAFGPM AAFPFMNPMM FGFPAPFFPP 180 FMCPPPAFAA AAMQSMNAMQ KSGMAPGMMM PPLFAPMMAA MAAASTPFFM AQQMQAMAAQ 240 AAAAQQQAAQ AAAAQQQQQY AATQAATSGA ATTAGTATAT SDTANSDDAV RRRHASVAAP 300 SVGNNAGLGG SSPAVKAEPV LHVQIPARPP SACGVAGSTN TSPGRVAAAT PGPDAVAATG 360 GESPAAAQAG ASNAAPPREQ AKSCGGAPGG VGARCSGSGV AVPAGGCGLE QQQQPLQRRV 420 SGGRGEEGGA ALPFHASSHS AFRPPQAQQE IKAES* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre03.g198800.t1.2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3DZL3 | 0.0 | A0A2K3DZL3_CHLRE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP322 | 15 | 29 | Representative plant | OGRP2767 | 5 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61620.1 | 2e-23 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Cre03.g198800.t1.2 |