![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cre03.g172800.t1.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 1083aa MW: 101223 Da PI: 6.9273 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 45.1 | 1.7e-14 | 777 | 803 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykte Cr +++tG C+yG++C+FaHgp Cre03.g172800.t1.2 777 YKTEMCRSWQETGACRYGSKCQFAHGP 803 9************************96 PP | |||||||
2 | zf-CCCH | 35.9 | 1.3e-11 | 815 | 839 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr+f++tG C+yG+rC+F+H Cre03.g172800.t1.2 815 YKTEHCRTFSATGVCQYGNRCRFIH 839 9************************ PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-19 | 772 | 808 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-10 | 775 | 808 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-8 | 776 | 803 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.197 | 776 | 804 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-10 | 777 | 803 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-12 | 810 | 840 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-8 | 810 | 841 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.915 | 814 | 842 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-6 | 814 | 841 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-8 | 815 | 839 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth | ||||
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1083 aa Download sequence Send to blast |
MPQLTKPAAT AATDSGSADP PTNSLPLAAA APAADAGGGA GDRGDDDYGG GGISLRPSWG 60 RAVTRQAAVA AAPNAPSAAI FSNGGGSGGG AQMPPAAAAP AAAEPAGPLR HTDSKLRSHP 120 FGASGGDITT GSSSGSGSGS EGSGGAAAAG HPRNRSASLR ASLDQPMWSP PLQPQPQPYL 180 QARPSSAAAA ADRTSTPPLP PRYPTSAEAA AATAAARELL DAGGTFPLHI LGGFGSGAGV 240 GSDGPDSDGE GGHALSETSL GSGAGGSHVF RGVGGTSPFH AAAAPASAGG GLGGAGGSRG 300 SLLSGPYFSY GSPLTSGPAN AMDSGGAAAG GGDGAGGFGG AGTQGFFSPS LLSQNPSFVS 360 VKGNDGGGGG GGGPGGGGGG MLLVVDASTG LVVGTAQQQP QQLQGGRDGA STPGSLAPST 420 PGVLTGGGFG GFAGGGHTPA TSVPGSLRSS LDLPRSPLAP MIGGAGGGRS SGEGRGQTAE 480 PAGPVAGAAA TADADAARAA LSALLARGGS GAVDISSLVE AAGLSMAPLQ GLPGGGGSGS 540 GGDVSMSAVL AAVLQQQAAA AAGMGSGMDD ASDSAAVAMA SGLEPTMAAT VLNEALAANG 600 GGLSFNVLLA LAQAANGAVG SSSNGGGAAT AAAAADAERA MALQAAMAAA AAATGPAAAA 660 GLMPAPPAVA LMTPLGTPAR GPPPGFIGGA GGANSQLLGG LPPPSPGFAL RSPAAAAGIN 720 SPSWRSSVPA GGSIGSSSLL GSPGPRTTQA AAAMAPQGLL AALGSPRGTG PKHNTLYKTE 780 MCRSWQETGA CRYGSKCQFA HGPEELRTVV RHPKYKTEHC RTFSATGVCQ YGNRCRFIHT 840 APPGAAGGTP RPTLLGPGVG PCSLLGSPHS SEHSGSDGGG GGAGGAGAAL QGNAESLGAT 900 LWGRAGDGGM QNQALPPAAA CLLSPARTSF FAASPTARGP MRHSALFSSP PYKMSRLHPP 960 VDAAGGGGPA QEEASPMPQH TLPHLPATPA AGGTPSSADA GGGSGAASRG VGFLLGGDGG 1020 GGRNGSSRGG GVAMQLFSAF GGAGGGLGGG GGSGNGDAVK PLAGPAPQSV GGPGEDAAMV 1080 DV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 4e-28 | 774 | 841 | 1 | 68 | Butyrate response factor 2 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cre03.g172800.t1.2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC087726 | 0.0 | AC087726.36 Chlamydomonas reinhardtii clone cr-40a20, complete sequence. | |||
GenBank | AC090433 | 0.0 | AC090433.10 Chlamydomonas reinhardtii clone cr-19b23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3DX70 | 0.0 | A0A2K3DX70_CHLRE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3623 | 13 | 14 |
Representative plant | OGRP2058 | 16 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66810.1 | 7e-24 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cre03.g172800.t1.2 |