PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre03.g163200.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family NF-X1
Protein Properties Length: 1060aa    MW: 106215 Da    PI: 8.22
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre03.g163200.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.45.3e-07266284120
            zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                         CG H+C  lCH+GpCppCp+
  Cre03.g163200.t1.1 266 CG-HTCLLLCHPGPCPPCPL 284
                         **.***************95 PP
2zf-NF-X116.71.6e-05370388119
            zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                         CG H C++ CH GpC++Cp
  Cre03.g163200.t1.1 370 CGSHVCERVCHAGPCGECP 388
                         ******************8 PP
3zf-NF-X118.15.8e-06498523120
            zf-NF-X1   1 CG......kHkCqklCHeGpCppCpq 20 
                         CG      +H+C ++CH GpC pCp+
  Cre03.g163200.t1.1 498 CGrwlkcrNHRCPAPCHSGPCRPCPL 523
                         777777779***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS013590151220IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004389.6E-4266284IPR000967Zinc finger, NF-X1-type
PfamPF014224.1E-4266283IPR000967Zinc finger, NF-X1-type
CDDcd060089.70E-7308355No hitNo description
SMARTSM004380.028318336IPR000967Zinc finger, NF-X1-type
PfamPF014220.093318334IPR000967Zinc finger, NF-X1-type
CDDcd060081.23E-8360401No hitNo description
SMARTSM004383.3E-4370389IPR000967Zinc finger, NF-X1-type
PfamPF014225.0E-4370388IPR000967Zinc finger, NF-X1-type
CDDcd060084.89E-8414463No hitNo description
SMARTSM0043814424452IPR000967Zinc finger, NF-X1-type
PfamPF014220.0034424443IPR000967Zinc finger, NF-X1-type
SMARTSM004380.019477496IPR000967Zinc finger, NF-X1-type
PfamPF014220.009477494IPR000967Zinc finger, NF-X1-type
CDDcd060084.63E-11494542No hitNo description
PfamPF014228.7E-4498522IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0012504523IPR000967Zinc finger, NF-X1-type
SMARTSM004384.8561582IPR000967Zinc finger, NF-X1-type
PfamPF014225.7571581IPR000967Zinc finger, NF-X1-type
SMARTSM0043822726770IPR000967Zinc finger, NF-X1-type
PfamPF014220.12726736IPR000967Zinc finger, NF-X1-type
SMARTSM004380.59783801IPR000967Zinc finger, NF-X1-type
PfamPF014220.91785799IPR000967Zinc finger, NF-X1-type
SMARTSM004380.15850871IPR000967Zinc finger, NF-X1-type
PfamPF014220.89852866IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1060 aa     Download sequence    Send to blast
MPRVAGGNGP MRRPAAPPGV AGGGGPGGVQ VFSNHSSDDE GGMGVSGGAG AGGGGGGGGG  60
GGGGGGWERG MGKPPGGGGG GGGDTRAWQG GGGGSGGGSG GGQSEQAAAA LFERYLAAGG  120
MQGDDLGKDQ VFEQGLSRVR ACLSNVDSSC CLICLNHIAP TEAVWHCGRG CHTVLHLVCI  180
QEWARSQVDA AKAKAAARLS QFPAAGDAAA AAAEWGCPKC RVTYPAAGIP STYTCFCGKA  240
TNPEFDPWVA PHSCGEVCGR PLPGGCGHTC LLLCHPGPCP PCPLVVDAGC YCGARRLKRR  300
CGHHEFSCEG VCGAKLECGH RCPDICHPDD CAPCAVPGDF RCRCGAEARR RGCGERDWQC  360
GRVCGKALGC GSHVCERVCH AGPCGECPFA GVRTCPCGKV EHVGMGCTDK VPSCGATCGK  420
LLPCGVHTCA DRCHQGECSA QCRGPAVKSC RCGKSQKEVL CFQEFTCERR CNDMRACGRH  480
PCKRRCCDGN CPPCEEVCGR WLKCRNHRCP APCHSGPCRP CPLSSTVTCA CGRASCTLPC  540
GAEDKAEPPH CAAPCAVPRL CRHAPSLPRH RCHFGPCPPC PQPCATPLEC GHACSVPGCH  600
DPPPPPVPDF VKPAAPKAPS VAAAAAAAAA AAAGSDGAVS AGNSKKKLNA AAAVEVAAAA  660
AVAAPASLAA QMLAAAAASG QMPSTCPPCS VRQQVACVGG HTRLDLPCAS ARPFACGAAC  720
GRPLSCGNHS CALPCHAVAY DPITIARAAA AAAAGGAAAA DPSLPRPCRQ CESRCDRPRP  780
AGCAHACPLA CHRGPCPRCE APIRHGCMCG KSTLAVACAE LGAAAAAVAA GGSAAALSCG  840
KPCHRQLPYC PHPCKALCHA GACPDPSACA AEVSVRCACP AKRRAKWRCS EVQAALVASG  900
RPRVYDDSAH APRLLPCDAE CEKARAKGAV AGGTATTGKA GAKGSTGALT TSASVDSVGE  960
EAVAAAAAAG TTAAAAAAAA GAGAAAGDKK QGKLTRAERE ALAAKKEADR KRQEWRHALI  1020
RGVVLGLLVL LAAALALGMR SLLLALDARA RAAWAPSKV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre03.g163200.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001703384.10.0predicted protein, partial
TrEMBLA0A2K3DWI90.0A0A2K3DWI9_CHLRE; Uncharacterized protein
STRINGEDP060660.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP530277
Representative plantOGRP63251718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.11e-113sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors