PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre02.g109683.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family bHLH
Protein Properties Length: 517aa    MW: 52318.8 Da    PI: 4.9528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre02.g109683.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12266336354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC......................TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkas...................kapskKlsKaeiLekAveYIksL 54 
                         ++h+ +E++RRdriNs ++eLr+l+P+                      + s +  K  +L  +++ +k L
  Cre02.g109683.t1.1 266 VSHSTVEKQRRDRINSLIDELRDLVPPTQqqqqqqqqigvvtigvsdnPEASSRRPKHVVLADTINLLKAL 336
                         58*************************55488888888888888888877777788888888888777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.79E-8262341No hitNo description
SuperFamilySSF474591.31E-10263343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.687263336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-12267340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9267336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-8269342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.91E-9428485No hitNo description
PROSITE profilePS5167110.241431507IPR002912ACT domain
CDDcd048734.03E-10432499No hitNo description
Gene3DG3DSA:3.30.70.2602.1E-7432487No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MDFPTAEPGA GDFSFGDEAQ YIFTDTELDS ILNAVEDRVR GGGGGATEQV FLDFLGGDDN  60
QQPLPLQFQP RSLETHDPSN SLSAAAAAQD AVASVPLGGA LGGVPLQGAA PSISTAPPQA  120
VPSSAITIPA LTSSTLTPGA LLSGAVSSPQ GTPVPQHTPA APGLPGVPPP PGIPTAPTLP  180
MGFPQLMVQV LPAQAALAAH LQQQQQQSIA AALAPQLAAA VHAHAAPMAP LAAPPAQIPA  240
RVASPTYRHT GRAQAAEAAA GSRAPVSHST VEKQRRDRIN SLIDELRDLV PPTQQQQQQQ  300
QQIGVVTIGV SDNPEASSRR PKHVVLADTI NLLKALRQRV SFAAVTAELQ QLPAGGSGGG  360
GGGGGGALPL PLPVPGMYGA VAGAGMVPGM PGSGVQPVKQ EPQGSSSQDD DDMGHPGGPG  420
VTVKKGPDCF YVQVTCPDRK GLLSDITDTL RNLSLEVRTA AVTTNGGSVR DVFEVVPPDG  480
AVALAPEAVQ SMVQGALSQR VAEGQQEVTA GKRPRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre02.g109683.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001699945.11e-149predicted protein
TrEMBLA0A2K3E2W30.0A0A2K3E2W3_CHLRE; Uncharacterized protein
STRINGEDP076411e-149(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP34551013