PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre02.g097850.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 1311aa    MW: 127783 Da    PI: 5.004
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre02.g097850.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-0610891110325
                          S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH    3 telCrffartGtCkyGdrCkFaH 25  
                          t+ C++++  G C +Gd C+F H
  Cre02.g097850.t1.1 1089 TPACKYWRL-GRCTRGDACTFRH 1110
                          99*******.***********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-410871112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.19210871113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-510891110IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-410891110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-410911110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.07511151143IPR000571Zinc finger, CCCH-type
SMARTSM003560.002211151142IPR000571Zinc finger, CCCH-type
SMARTSM003561011431169IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.15511471170IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1311 aa     Download sequence    Send to blast
MALPQWAELW ANIAEQSNEA RIQPQTGSES HYNGYAEAGL GTLFQAVVLP SAAATELLQR  60
ILNTPLHEFE GCGTSILLAE PAPSGGVRPV APDPGLSEQP STAPAPRRKG ATAAAAASEA  120
VIDAGPEPAS LHGPLETIAG ATGGIRGQGS KAPVTLAAAA APGSLPATAP ALAPGSRAPT  180
AAAVAGTGAA AAPTAVAAAA ARRAGPKDPL QRMRQLHQRE RRKREQQEQR GKKKAQGRAP  240
EPRQQGWSWQ TAGEDAISDE EEAAEEEEEE EPVAVWARAG AAAEEDREGG SLHEDEGGEA  300
ADTPGAGIDD RARQPAAAGD APPAAKRPRR GALGPASAPA ASPDDPLAAA EAGPLDGQER  360
DQAPGLQDPG ESPASGRGGA RGRGRGRGRG STATGTGASR GRGRGRGRGA RGSGSGSAGV  420
EPAAAADADG LAAPAPGPGA GGRLTQGAAV AAGAAAHPTD DDVEALFMDS ASPPSASPPS  480
SQSGSPPPSP GRGPGGQEPC GPVGGGAGAA RVTAGAGLAP AAAGAGAAAA AAAMAADAGV  540
AAGDEGGERQ LVSVISVRPN RSLTTLGSVD VRSLVQLGSG AAAGPAAAAA RQRAAAATAA  600
AAAGVAAGAV GSQRARQQGQ QQQQQQQEEE DAEDAELLSM PLLGGRPLAA AIGGGLEATP  660
AAAGATGLLQ QAPSTTAGER KLAALATAKQ LLASQRSQGA LSEPGVQQAA AVSGAAAAAS  720
AAATAAAAAD WAADIAAGLG DEDAGQGSHL GATETAMAAQ APAPSAPASG RVAGAPQAQT  780
IAAIRAAAAA AAKAKAAPAV PEPGGTTALA ATPAAAAADV DSEPAGGMAV QWRRWAEPGL  840
PHGESLGLAK PGELTGGAAG ALPSGACPGA DGADGAGGDA GGGGGDDRAG GGDAGGGGYD  900
SDGEDGEVVV EEGAGQQHAG GEEAREGRDD PKPQQQQQQQ QQQQVEAAEA AGQQGRQRGG  960
RQGGRGAAEG RGRAAGRATG RSQGRGRGRQ QLQEAAPGRR QSGRKRGLSD AADDDAAAAG  1020
SPPPQQQQQQ QQQQQQQPLE VGLYAEVKRF QAQQRKARAI AAAKEGGAGA AAGGVFVDPD  1080
RPMPEVRETP ACKYWRLGRC TRGDACTFRH VGQPAPRLLP CRFWRLGRCF RGAAACAFSH  1140
DPGTREPCPA LLEAGVCSRP GDCPHEHNYP EDDLHALREY MQFEAGKAAA AAAAANAAGG  1200
ASAAAAARAA NSAGAATAVA GGGVAAAGLE EVLLQPPYAA ARAPVAAGWV AGWSGAAGAG  1260
AGAGAAPGAA QDVGVIGGAG GGGWGAAADA LLPQQPALLR AANNNDEDVF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1399408RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre02.g097850.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3E2030.0A0A2K3E203_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1135233
Representative plantOGRP81611212