 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cre02.g079200.t1.2 |
| Common Name | HAP3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
|
| Family |
NF-YB |
| Protein Properties |
Length: 210aa MW: 21897 Da PI: 5.3882 |
| Description |
NF-YB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cre02.g079200.t1.2 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YB | 177.5 | 1.3e-55 | 16 | 110 | 2 | 96 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92
reqdrflPian+srimkk+lP+naki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa++tlGfe+y+eplk+yl+k+re
Cre02.g079200.t1.2 16 REQDRFLPIANISRIMKKALPNNAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMTTLGFEEYLEPLKLYLAKFRE 106
89***************************************************************************************** PP
NF-YB 93 lege 96
+e++
Cre02.g079200.t1.2 107 AEAA 110
9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 210 aa
Download sequence Send
to blast |
MSGDEGDGRD GNSNAREQDR FLPIANISRI MKKALPNNAK IAKDAKETVQ ECVSEFISFI 60
TSEASDKCQR EKRKTINGDD LLWAMTTLGF EEYLEPLKLY LAKFREAEAA TSNKPGGGSG 120
ANAEAKREAA AAAAAAAAAA AAVSQQQAAQ QQMAAQLQAG MAFPGLMPAQ FQGLPPGMIP 180
AGFPGLPLPP GVPGLMMPGG VVPKQEPPK*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1n1j_A | 5e-48 | 16 | 106 | 3 | 93 | NF-YB |
| 4awl_B | 5e-48 | 16 | 106 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
| 4csr_A | 5e-48 | 16 | 106 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
| Publications
? help Back to Top |
- Xie Z, et al.
Duplication and functional diversification of HAP3 genes leading to the origin of the seed-developmental regulatory gene, LEAFY COTYLEDON1 (LEC1), in nonseed plant genomes.
Mol. Biol. Evol., 2008. 25(8): p. 1581-92
[PMID:18453547] - Han X, et al.
Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis.
J. Exp. Bot., 2013. 64(14): p. 4589-601
[PMID:24006421] - Hwang YH, et al.
Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
Plant Cell Rep., 2016. 35(4): p. 857-65
[PMID:26754793] - Hossain MA, et al.
Identification of Novel Components of the Unfolded Protein Response in Arabidopsis.
Front Plant Sci, 2016. 7: p. 650
[PMID:27242851] - Zhao H, et al.
The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
Front Plant Sci, 2016. 7: p. 2045
[PMID:28119722]
|
