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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre01.g043550.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | SBP | ||||||||
Protein Properties | Length: 1158aa MW: 115048 Da PI: 8.4244 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 70.8 | 2.6e-22 | 2 | 63 | 12 | 73 |
TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------ CS SBP 12 seakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerr 73 ++ ++y++rh +Ce h k+ + +v+g++ rfCqqC+r h l+efD ++rsCr rL++ n rr Cre01.g043550.t1.1 2 ASERKYYQRHMICELHLKCLTLVVEGQRMRFCQQCARLHPLTEFDSDQRSCRVRLKHRNTRR 63 6779*********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 20.179 | 1 | 66 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.7E-21 | 2 | 63 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 7.4E-20 | 3 | 53 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.02E-19 | 3 | 64 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1158 aa Download sequence Send to blast |
MASERKYYQR HMICELHLKC LTLVVEGQRM RFCQQCARLH PLTEFDSDQR SCRVRLKHRN 60 TRRVLLKRQR REEERRRGEG EQTGAAAGTA PAAGNASGSA LKRTAQQGAQ LRAAAGGAAA 120 DDDRTISEDE VGDIGSESPT SSSGGDGGGR RATRRPAAAA AAATAAAADG AVGGGGRVTR 180 AATVAAAAAA AAAGAAAGCG GMNGGCTISD LLGAAAAAVH NDEGRQLQQA AQMTAAGDDG 240 GAAADGGRVA EQQQQMRGRA PPPHSSASDL AAAVQRAKVA IDVAADTHQQ MAVATAAQQQ 300 QQALADAPHN AGGAAVGRRS NYGSDTPPAA RPYGNACSGG GASRFAHYSS GSFGGAAAGA 360 DGATALTASG GGAAGAAAAA GGGGPMASSS LAVKAHSAGG GEQQALLGFY NSPPQQRQEQ 420 QYGMEGGMNG AAAAWGSSPG SPMTLLMNYV SAGLDGRGGG SCNAELGARQ LQRPHQQLSA 480 VAGLAAAAGP ANGGGSGGAG GGGQYMMLNG GSPSQQQLLL VEDLQQQQER RPTDAPPSSL 540 LGPRFPSSAS AAAAAAALGY SASFGAPRSP MYMSPPLAGA GGGAPFGGGY GGGPLGGSPG 600 LMTGSVDSHG DRHQQLMQQL QQPRMRQQQV YGSDAALLPA DGGGGGGGYG GGRSLMPPQQ 660 QQQQQALQLD ALGLLAAAGR GRQAGSQLSL LGLNSNGGSG GSGGGHRQSD AAAAGGGVML 720 DLHFQQQRQQ QLLERSPLQL GLPGGSFISD AGGALDDSSS MQLQQQPQLQ QQPYDHNLLV 780 LQQHQQMQMQ LWSAGGAAPA APIFVSGGSG CGPSALAAAH HGGGGGGGAA LLLGSSQHDL 840 AAGILGAAQG SSSADGTGGA GWARGGANGG GGLFSGLDNA ARGGSWSNMT TAAPPPMFGH 900 LSQQQASGVA GGLMYGGGGS GGSGDGGGSM TGMAALDPRM LSRQHQQQAS GHRTSTTTGS 960 WLLGNSAPPA GAGVSLLGGG TGGAHGGGTG GSGGGGKQLS PLPLPPRAHS LSRAGSSPAT 1020 GSGTLDGSLL PAGALVTSLG GGSSGWILGQ QQASAGAAGG LAGPAKVIAA LQLPTAAAAL 1080 NWQQQQQHHP SRTEHQQYQQ QRLHQRFEQQ QQQLLQMSNE VELHTQQQQQ RNQFVMQQHM 1140 QQVQDLQEQQ QYHHHYQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-13 | 1 | 63 | 20 | 82 | squamosa promoter binding protein-like 4 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 58 | 70 | RNTRRVLLKRQRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre01.g043550.t1.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3E7K2 | 0.0 | A0A2K3E7K2_CHLRE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Representative plant | OGRP4828 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 2e-17 | squamosa promoter binding protein-like 10 |
Link Out ? help Back to Top | |
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Phytozome | Cre01.g043550.t1.1 |