PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre01.g035150.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 399aa    MW: 38897.9 Da    PI: 9.5925
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre01.g035150.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08103124627
                         -SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                         C +++ +G C++GdrC++ Hg+
  Cre01.g035150.t1.1 103 CVRWSNSGSCQFGDRCRYLHGQ 124
                         99******************97 PP
2zf-CCCH413.1e-13177203127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC  f++tGtC+yGd+C FaHg+
  Cre01.g035150.t1.1 177 PKTRLCEKFMATGTCRYGDTCIFAHGM 203
                         79***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.03397125IPR000571Zinc finger, CCCH-type
SMARTSM003560.002199124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-7100129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-8102130IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5103124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544176204IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-9176208IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-8176203IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10177203IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-15178208IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MFPNPFFGMG APFGPGMNNM GGMPGQEMAG MPGFPGMPGG TMGPGMPGGN MGGGGGMMGG  60
GPMGGQGHGG GGGGGGGGGE GHRGGMGGGG GRGPGGDKRP GMCVRWSNSG SCQFGDRCRY  120
LHGQGDSRYP PGPSDGGPGG FMGGGGGGGG GGPIRRGGRG GGGDDGPGGR GSRPTGPKTR  180
LCEKFMATGT CRYGDTCIFA HGMEELRPGR DAGGPPPPQP PPQQAQQMQQ QQQQQHQQQH  240
QQQQQQQHRQ QQQDGGNATS PSRGAFGGPS GRPQAQQGGP AAGARGQPPP AAASAPQDAA  300
AATGAQAATA AATAAAPSKP QEVTFVDKVR ALCGVLHIGQ AAALAAEKPL ALTTAAMSLR  360
AGTAYKENPF ADGVERYVAI SAGGGGGGGS AGQGQMQH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18291RGGMGGGGGR
2156162GGRGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre01.g035150.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3E7030.0A0A2K3E703_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1126533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.14e-08C3H family protein