PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre01.g014050.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 409aa    MW: 45503.3 Da    PI: 4.5106
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre01.g014050.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.5e-0693113526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C  f+r  +C  G++CkF+H+
  Cre01.g014050.t1.2  93 VCE-FFRHNQCTKGNKCKFSHD 113
                         577.9999*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.43288115IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-588114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-689113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-490114IPR000571Zinc finger, CCCH-type
SMARTSM003560.85163199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.868163200IPR000571Zinc finger, CCCH-type
PfamPF165432.3E-12224302IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MAPKAAPKVD KAKAAAKQKA AEDKTFGLKN KNKSAKVQKY VQNVKTNATQ NLGAYKPVEA  60
KKKDKAPDEL GNIFLPTIKQ PKVPDGVDPK SIVCEFFRHN QCTKGNKCKF SHDLSVERKG  120
PKISLYADQR DLGKDGEDKE GMEDWDQATL EAAVKQKHAN ENKPTDIICK FFLEAVEKKL  180
YGWFWKCPNG EDCKYRHALP HNYVLKSQMK ELLEEEARNT KDIAESIEEE RAKVVARTPI  240
TQETFSAWHR AKREAKAAKR ATDEEERRKK GILNGREIFM QEGFVANDDA SAADEYGFEV  300
DEEEEIKAMI ERAAAAAEAA RQQAELGPVP EEAEEANEGA GPSGSGAGPS THLNLEDEEA  360
QELFDDDDDD DEEMEDDEEM DDDDDDDDEL EGLEDHVKGM HVGGAAGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre01.g014050.t1.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001689452.10.0predicted protein
SwissprotQ0JHZ26e-93C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A2K3E5M60.0A0A2K3E5M6_CHLRE; Uncharacterized protein
STRINGEDP091900.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP326744
Representative plantOGRP464966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.13e-79C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]