PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre01.g011150.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

bHLH

Protein Properties

Length: 1135aa MW: 108163 Da PI: 6.2362

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre01.g011150.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.8	2.3e-09	458	521	4	53
HHHHHHHHHHHHHHHHHHHHHCTSCC.C................TTS-STCHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as.............kapskKlsKaeiLekAveYIks 53 +h+ +E+ RRdriN+ +e+L el+P ++ ++++ K K +iL Av ++ Cre01.g011150.t1.1 458 SHSTVEKHRRDRINHLIEQLGELVPAcDPryrgaaadgeaagGGGGLKRPKHAILADAVIRYRQ 521 79**********************766*******99999999*****999865555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.4E-9	454	535	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.465	454	522	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.31E-5	457	527	No hit	No description
Pfam	PF00010	4.4E-7	458	523	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-11	458	527	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-8	460	528	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1135 aa Download sequence Send to blast
MASLEFWPGP SGQDGCHMCS DVEMQDYLFQ HEQDGMLGFD LPHVDDDIGN ADPLLLAPSG 60 AGCGQTPGAV YNVLTQLQAA PLGSLAIVKQ EPSESSHGSA AGSPSNDGPL SSSTPHHPAH 120 PSSASLSPFH PQAQHHHHHS RNNTLLGSCA AAGAGFGSGS YDSSCSGPTL AAPAEVGSAS 180 VTFSATAVPA AATALAAASS LSQQQQQQLQ QQLLASGMPL VSFSAIPLPA GQEQAATCAQ 240 QAHLAAAAAP YISAATASMT SMLNIPNLHT YALSSSTPAG AAETAAGACA NGESGSASGA 300 APAFEPHMAV TAAPAGTAAG APAVIITPAP ASAPTASLVT DVFASPFAHA GMTAPSAAPP 360 PPSLLDAAVA VQQQLAAAAA AAAAAAAGGA AAMLATSTPS ADADNFAFAF SGDDDDEDPS 420 YGASASLGGK RGSSAAPSKA ASGGGGGGGG NCRKLPLSHS TVEKHRRDRI NHLIEQLGEL 480 VPACDPRYRG AAADGEAAGG GGGLKRPKHA ILADAVIRYR QLQQDNETLR RQLAATAAAA 540 AAAASGFKNM LQQQQQQQQQ QTASGDGTSA VAVAALTVPS TLPAATAFAE AAPVAASSTA 600 AAMATSHSAA PSLPSSPTTP AAASVAAPSG AAGAATSATM QSLLVQAAAA AAAVGAAASG 660 RNGAAAAPAP PPPAGSALVP AAAASPATAA TAATAATAAA SAGLNLLHLP FIKAAAAAAV 720 AAAASASAAA HGSAPAAAPA AGMPQLPAGF VPVGLSTHGA VSNSSIAAAA TATAAAAATA 780 APRCQQVSAT APPGAEPKVP QLQPQPPQRL QPQAKVQAQP QHQTAGLVMV PVWTGAAPGA 840 VPPPPVAIAP APPPGSSCTP WSSCSHLVAG AASAVAAAST EPSSCGSVEE DAAAAAAAAA 900 EVEAEASTEV RVGPNSSASA SGSASGSASG CAAGAMTAAA AAAAAAPALP VLPQPAAAPT 960 ADAAAAAAAA AVAAAAAAAA AAASVSDAAA TSAAGASSSS WLVRIVCPPR RDLAAAATRA 1020 LTAAGIRLRG VNVSPAPGPG HRMALELEVE CGEDVMPRGQ QVGAIQCAIH AALAEAADVE 1080 NVDSGDTTAA AAAAAAHNAL RGVSGGGGGP KRLIHQAPAA PPGGGARKRS RTHR*

Sequence ? help Back to Top

Protein Sequence Length: 1135 aa Download sequence Send to blast

MASLEFWPGP SGQDGCHMCS DVEMQDYLFQ HEQDGMLGFD LPHVDDDIGN ADPLLLAPSG  60
AGCGQTPGAV YNVLTQLQAA PLGSLAIVKQ EPSESSHGSA AGSPSNDGPL SSSTPHHPAH  120
PSSASLSPFH PQAQHHHHHS RNNTLLGSCA AAGAGFGSGS YDSSCSGPTL AAPAEVGSAS  180
VTFSATAVPA AATALAAASS LSQQQQQQLQ QQLLASGMPL VSFSAIPLPA GQEQAATCAQ  240
QAHLAAAAAP YISAATASMT SMLNIPNLHT YALSSSTPAG AAETAAGACA NGESGSASGA  300
APAFEPHMAV TAAPAGTAAG APAVIITPAP ASAPTASLVT DVFASPFAHA GMTAPSAAPP  360
PPSLLDAAVA VQQQLAAAAA AAAAAAAGGA AAMLATSTPS ADADNFAFAF SGDDDDEDPS  420
YGASASLGGK RGSSAAPSKA ASGGGGGGGG NCRKLPLSHS TVEKHRRDRI NHLIEQLGEL  480
VPACDPRYRG AAADGEAAGG GGGLKRPKHA ILADAVIRYR QLQQDNETLR RQLAATAAAA  540
AAAASGFKNM LQQQQQQQQQ QTASGDGTSA VAVAALTVPS TLPAATAFAE AAPVAASSTA  600
AAMATSHSAA PSLPSSPTTP AAASVAAPSG AAGAATSATM QSLLVQAAAA AAAVGAAASG  660
RNGAAAAPAP PPPAGSALVP AAAASPATAA TAATAATAAA SAGLNLLHLP FIKAAAAAAV  720
AAAASASAAA HGSAPAAAPA AGMPQLPAGF VPVGLSTHGA VSNSSIAAAA TATAAAAATA  780
APRCQQVSAT APPGAEPKVP QLQPQPPQRL QPQAKVQAQP QHQTAGLVMV PVWTGAAPGA  840
VPPPPVAIAP APPPGSSCTP WSSCSHLVAG AASAVAAAST EPSSCGSVEE DAAAAAAAAA  900
EVEAEASTEV RVGPNSSASA SGSASGSASG CAAGAMTAAA AAAAAAPALP VLPQPAAAPT  960
ADAAAAAAAA AVAAAAAAAA AAASVSDAAA TSAAGASSSS WLVRIVCPPR RDLAAAATRA  1020
LTAAGIRLRG VNVSPAPGPG HRMALELEVE CGEDVMPRGQ QVGAIQCAIH AALAEAADVE  1080
NVDSGDTTAA AAAAAAHNAL RGVSGGGGGP KRLIHQAPAA PPGGGARKRS RTHR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre01.g011150.t1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3E5H0	0.0	A0A2K3E5H0_CHLRE; Uncharacterized protein

Link Out ? help Back to Top
Phytozome	Cre01.g011150.t1.1