PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_41225_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 429aa MW: 46966 Da PI: 4.74

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_41225_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	113.6	1.2e-35	120	220	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkeps 79 lfqrlw++eDei lL+G++d+++++ + ++d+ fy+ +k++++++++k+qlveK+rrLKkK+++ ++k++sgke+s Cotton_A_41225_BGI-A2_v1.0 120 LFQRLWTDEDEIELLKGFLDYTTSKTNsnsshHHHHDTALFYDLIKSKLQLDFNKNQLVEKLRRLKKKYRNVMNKINSGKEFS 202 79*****************7766554544334459999*************************************** PP DUF573 80 fskehdqkifelskkiWg 97 f+++hdq +fe+s+kiW Cotton_A_41225_BGI-A2_v1.0 203 FKSPHDQATFEISRKIWS 220 ***************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.7E-32	121	220	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MASEQYGAVF EESQDDDEEP SSSGNDDVLN GNDEEDEELL EEEEEEDFNS PSLLPQPIAA 60 VVPSASIPAV PLAVPSSTVV TVASVPLRGS TPDSKRQRID SAVSEKKPPP PQQFDESRRL 120 FQRLWTDEDE IELLKGFLDY TTSKTNSNSS HHHHHDTALF YDLIKSKLQL DFNKNQLVEK 180 LRRLKKKYRN VMNKINSGKE FSFKSPHDQA TFEISRKIWS SSVGKVEDNV LDYDENNITP 240 TPTPTPTTTN INFLDECGEK KNLTPKSAAN KRRSKSKGGK LEEKRVLNDG FVISNNNFNN 300 RSDHDQGNVE GLGGGGGGSG AGGERGNLTA VVEETVKSCL TPVFKELLGS LIGGGGGGGR 360 GISGMAMNAM PLSFGGTSNF GSGGGGNVEF MDERWRKQQI LELEVYSKRL ELVQDQIKVA 420 LEELRSIGG

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MASEQYGAVF EESQDDDEEP SSSGNDDVLN GNDEEDEELL EEEEEEDFNS PSLLPQPIAA  60
VVPSASIPAV PLAVPSSTVV TVASVPLRGS TPDSKRQRID SAVSEKKPPP PQQFDESRRL  120
FQRLWTDEDE IELLKGFLDY TTSKTNSNSS HHHHHDTALF YDLIKSKLQL DFNKNQLVEK  180
LRRLKKKYRN VMNKINSGKE FSFKSPHDQA TFEISRKIWS SSVGKVEDNV LDYDENNITP  240
TPTPTPTTTN INFLDECGEK KNLTPKSAAN KRRSKSKGGK LEEKRVLNDG FVISNNNFNN  300
RSDHDQGNVE GLGGGGGGSG AGGERGNLTA VVEETVKSCL TPVFKELLGS LIGGGGGGGR  360
GISGMAMNAM PLSFGGTSNF GSGGGGNVEF MDERWRKQQI LELEVYSKRL ELVQDQIKVA  420
LEELRSIGG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX577819	8e-66	JX577819.1 Gossypium hirsutum clone NBRI_GE9719 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017626843.1	0.0	PREDICTED: mediator-associated protein 1-like
TrEMBL	A0A1U8NV46	0.0	A0A1U8NV46_GOSHI; mediator-associated protein 1-like
STRING	Gorai.013G121800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	4e-62	DNA-binding storekeeper protein-related transcriptional regulator