PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_40778_BGI-A2_v1.0 | ||||||||
Common Name | F383_06292 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 318aa MW: 35533.5 Da PI: 6.8595 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.5 | 3e-33 | 19 | 72 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ Cotton_A_40778_BGI-A2_v1.0 19 PRLRWTPELHQCFVQAIERLGGQDKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-32 | 15 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.272 | 15 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-16 | 17 | 74 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.9E-25 | 19 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-9 | 20 | 71 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MGSCGRSGAV RQYIRSKVPR LRWTPELHQC FVQAIERLGG QDKATPKLVL QLMDVKGLTI 60 SHVKSHLQMY RSMRSDLSRQ DRSSTHQRRQ SFEKHDGCVD DVNDIMGFHS TSKPIEESDS 120 HLIHSPLPSK RARIETKSSI SDQNLQCSQG VCERVSNPYF YDDYLQTMAV YKGIKEGNGA 180 FIWEHTQSHP QAQGQSTTFS LPHDLYNLNS FKYSVEESDF LKVSEVDVED HKYVGKHVDD 240 HPNARRHAGK DDEVEDKGGG CELSLSLSLH HPSSQSEISS SSEALSLVSG SNYKDCSGSS 300 SCTLRSINLD LSIALCGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-20 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-20 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-20 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-20 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016703776.1 | 0.0 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
Refseq | XP_017617444.1 | 0.0 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A0B0NL62 | 0.0 | A0A0B0NL62_GOSAR; Uncharacterized protein | ||||
TrEMBL | A0A1U8KMR9 | 0.0 | A0A1U8KMR9_GOSHI; putative Myb family transcription factor At1g14600 | ||||
STRING | Gorai.002G169300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 1e-34 | G2-like family protein |