PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_40778_BGI-A2_v1.0
Common NameF383_06292
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 318aa    MW: 35533.5 Da    PI: 6.8595
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_40778_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.53e-331972255
                     G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                                prlrWtpeLH++Fv+a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+
  Cotton_A_40778_BGI-A2_v1.0 19 PRLRWTPELHQCFVQAIERLGGQDKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72
                                8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-321576IPR009057Homeodomain-like
PROSITE profilePS5129413.2721575IPR017930Myb domain
SuperFamilySSF466891.79E-161774IPR009057Homeodomain-like
TIGRFAMsTIGR015577.9E-251972IPR006447Myb domain, plants
PfamPF002492.0E-92071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGSCGRSGAV RQYIRSKVPR LRWTPELHQC FVQAIERLGG QDKATPKLVL QLMDVKGLTI  60
SHVKSHLQMY RSMRSDLSRQ DRSSTHQRRQ SFEKHDGCVD DVNDIMGFHS TSKPIEESDS  120
HLIHSPLPSK RARIETKSSI SDQNLQCSQG VCERVSNPYF YDDYLQTMAV YKGIKEGNGA  180
FIWEHTQSHP QAQGQSTTFS LPHDLYNLNS FKYSVEESDF LKVSEVDVED HKYVGKHVDD  240
HPNARRHAGK DDEVEDKGGG CELSLSLSLH HPSSQSEISS SSEALSLVSG SNYKDCSGSS  300
SCTLRSINLD LSIALCGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-202074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-202074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-202074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-202074357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016703776.10.0PREDICTED: putative Myb family transcription factor At1g14600
RefseqXP_017617444.10.0PREDICTED: putative Myb family transcription factor At1g14600
TrEMBLA0A0B0NL620.0A0A0B0NL62_GOSAR; Uncharacterized protein
TrEMBLA0A1U8KMR90.0A0A1U8KMR9_GOSHI; putative Myb family transcription factor At1g14600
STRINGGorai.002G169300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.11e-34G2-like family protein