PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_40771_BGI-A2_v1.0
Common NameF383_20313
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 333aa    MW: 37013.5 Da    PI: 5.0327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_40771_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH573.4e-184291255
                                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                r +h+e E+rRR++iN++f++Lr+++P++    ++K +Ka+ L +++eYI+ Lq
  Cotton_A_40771_BGI-A2_v1.0 42 RSKHSETEQRRRSKINERFQTLRDIIPQN----DQKRDKASFLLEVIEYIQFLQ 91
                                899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.1E-2437111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.14E-174095No hitNo description
SuperFamilySSF474591.13E-1940117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.5114090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-154291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-134696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MVKSVASAQL HQEEEDDDGC EDKRETVKVE ANGSEQKANS NRSKHSETEQ RRRSKINERF  60
QTLRDIIPQN DQKRDKASFL LEVIEYIQFL QEKLQIYEGS YQGWSQEATK LIPWRNHRGL  120
AESFIDHSQI MNNGSNCEND GVIPSMVANA QNSIESDLGD AAVFKTPDHP PVPATSTVSM  180
QTQSNTIATH GRGSITFHES ASDSENMVHQ PQFQSWQSRD CLSESAVANN SAIAREDLTI  240
RDESVDPSSA YSQGIRNSLT QVLQSSGVDI SQASISVKID VGKRVAAGMT SMPSSSKEKD  300
IQYTSNQEMA QTGVCSYTEE SDQAYKRHRT GKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609969.10.0PREDICTED: transcription factor BIM2-like isoform X1
TrEMBLA0A0B0NVI30.0A0A0B0NVI3_GOSAR; Transcription factor BIM2-like protein
STRINGGorai.001G197500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1716778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-60BES1-interacting Myc-like protein 2