PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_40713_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 579aa    MW: 62644.4 Da    PI: 8.7482
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_40713_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-057294123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                + C+ C+k F r  nL+ H r H
  Cotton_A_40713_BGI-A2_v1.0 72 FICEVCNKGFQREQNLQLHRRGH 94
                                89*******************88 PP
2zf-C2H213.10.00028148170123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 +kC++C+k++  +s+ k H +t+
  Cotton_A_40713_BGI-A2_v1.0 148 WKCEKCSKRYAVQSDWKAHSKTC 170
                                 58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.17E-77194No hitNo description
Gene3DG3DSA:3.30.160.606.5E-67194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.8E-57294IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.997294IPR007087Zinc finger, C2H2
SMARTSM003550.00527294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355100113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-5136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.17E-7143168No hitNo description
SMARTSM00355130148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MAAASSSKPF FGTREENQNQ MMQEQSSIAT PTSSTAPTTA PQKRKRNHPG TSYPDAEVIA  60
LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL RQKTTKEVKR KVYLCPEPTC  120
VHHDPSKALG DLTGIKKHYS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRRDSFI THRAFCDALA QESARHPTNL STMGSHHLFG DNHHMSLGLS HVRSQIPPLQ  240
DQNQVQPSSN LLRLGSTSGA VKFDHLISPS NHSSLQNMPS SMFFMAEAAN QGFHQDHQSH  300
HGHGSYPNKP LHGLMQLPDL QGSTNNSPTS ANFFNLGFFS NTSATSSIST SEIGGGQGPA  360
LFPSNMGDQV GSGMSSLYTT SMQHENISPH MSATALLQKA AQIGSTTSNN TTSTLLRGLG  420
SSLSGATKSD RPVFSPNFGS NFEGGNGSET LRSHMEDDSN LQGLMNSLAA NGNSSIFDGG  480
PSHGQDNNFG GFNGSGLTLE SQSSNANFCN VNEAKLHQNL AAGIGGTDKL TLDFLGVGGM  540
VGNISGGFSQ REQQGINISS LEPDMKSSAQ PNTEHFGRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34144205364Zinc finger protein JACKDAW
5b3h_F3e-34144205364Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017615556.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_017615557.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1
TrEMBLA0A1U8HP150.0A0A1U8HP15_GOSHI; protein indeterminate-domain 5, chloroplastic-like
STRINGGorai.005G158200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43732654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-118indeterminate(ID)-domain 5