PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_39936_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24414.9 Da    PI: 8.9852
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_39936_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.42.9e-31959151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                +rienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gkl e++s
  Cotton_A_39936_BGI-A2_v1.0  9 ERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLSEFAS 59
                                69***********************************************86 PP
2K-box87.72.2e-29821711099
                       K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                                    ++++l+qe+ +Lk+++e+Lq++qRhllGe+LesL++keL ++e+qL+++l++ R+kK++llle +e+l kke+el+ enk
  Cotton_A_39936_BGI-A2_v1.0  82 PVDETQTLYQEVLRLKAKYESLQHSQRHLLGEELESLTVKELYKIEKQLDRALSQARQKKTKLLLERMEDLSKKERELEVENK 164
                                 55689****************************************************************************** PP

                       K-box  93 aLrkkle 99 
                                 +L+++le
  Cotton_A_39936_BGI-A2_v1.0 165 QLKSQLE 171
                                 ***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.539161IPR002100Transcription factor, MADS-box
CDDcd002653.04E-38277No hitNo description
SuperFamilySSF554555.1E-31291IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-313859IPR002100Transcription factor, MADS-box
PfamPF014868.4E-2584170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.95186176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGRGKVVLER IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLSEFASN  60
ISVPTTLEKY WQHRYSSPVD IPVDETQTLY QEVLRLKAKY ESLQHSQRHL LGEELESLTV  120
KELYKIEKQL DRALSQARQK KTKLLLERME DLSKKERELE VENKQLKSQL ELEHCFPSAQ  180
GLGDASIEMG NEYNMIPSQA NHAKQQSSTH VG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-20178175MEF2 CHIMERA
6byy_B2e-20178175MEF2 CHIMERA
6byy_C2e-20178175MEF2 CHIMERA
6byy_D2e-20178175MEF2 CHIMERA
6bz1_A2e-20178175MEF2 CHIMERA
6bz1_B2e-20178175MEF2 CHIMERA
6bz1_C2e-20178175MEF2 CHIMERA
6bz1_D2e-20178175MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5879956e-65JX587995.1 Gossypium hirsutum clone NBRI_GE22289 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609141.11e-154PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ8LLR12e-71MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A2P5XN211e-149A0A2P5XN21_GOSBA; Uncharacterized protein
STRINGGorai.006G045100.11e-146(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2505944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-66AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]