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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_39839_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
ERF |
Protein Properties |
Length: 392aa MW: 42567.7 Da PI: 8.428 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_39839_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 65.7 | 9.3e-21 | 168 | 217 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a++k++g
Cotton_A_39839_BGI-A2_v1.0 168 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAEAAARAYDEAALKFRG 217
7********.**********93....36*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 392 aa
Download sequence Send
to blast |
MCLIDKVAHR GGSSGYARFP TAGDAGGADE QQEYYSQSSR NRQVNQAMMQ QRNQGVMFLG 60 SQSQASEMST MVSALAHVAS GQRAGDWGYG GNVAGEVSSG FGLSGPSADS PSASGLWIGQ 120 KRGREDETGA QLVESAAPRV QRSFADFRGS HADSSSAATS ETGERRRRYR GVRQRPWGKW 180 AAEIRDPQKA ARVWLGTFDT AEAAARAYDE AALKFRGSRA KLNFPELVRL VPQPMQNFPA 240 TQTSVSSSLT TQFRPPYSTP LPSLYQSQHL HSPTADMLRD YWQYSQLLQS STDFHGQEAT 300 SLMEQMMQSS QLPNFQHSFL SSSLSPFPSS FVAPSSAASS SSSSSASFPL VFGEHQQFDV 360 FRQPSNQSQA SGSDFPVPPW SHPSHYPSST GS
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX582387 | 4e-46 | JX582387.1 Gossypium hirsutum clone NBRI_GE15207 microsatellite sequence. |