PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_39256_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 549aa    MW: 59608.2 Da    PI: 8.1354
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_39256_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-14186245155
                         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Cotton_A_39256_BGI-A2_v1.0 186 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 245
                                 57*******************666664477446**********99*************98 PP
2AP247.15.8e-15288339155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Cotton_A_39256_BGI-A2_v1.0 288 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 339
                                 57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.56E-17186255IPR016177DNA-binding domain
CDDcd000183.68E-21186255No hitNo description
PfamPF008479.8E-12186245IPR001471AP2/ERF domain
SMARTSM003806.1E-29187259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-15187254IPR001471AP2/ERF domain
PROSITE profilePS5103218.927187253IPR001471AP2/ERF domain
PRINTSPR003672.4E-6188199IPR001471AP2/ERF domain
CDDcd000183.23E-24288349No hitNo description
SuperFamilySSF541717.85E-18288349IPR016177DNA-binding domain
PfamPF008477.2E-10288339IPR001471AP2/ERF domain
SMARTSM003801.5E-33289353IPR001471AP2/ERF domain
PROSITE profilePS5103219.045289347IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18289348IPR001471AP2/ERF domain
PRINTSPR003672.4E-6329349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MDMNIRNMDS SSSPNYSLAF SLSSHHHHQS HLSFFSSSSN PTLFQAFNTS AAAASAFPTT  60
APPANSLSAE KDAGGEGPAT AASATTDLSM FKGGPKLEDF LGGSSTTAGV GGAPQLQLLH  120
HHNFSTQTPV TVSDKDVYDS ELKTIAARFL RGFSSEQIDI HKQQQQALTA EPAPKRSVDT  180
FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR REGQSRKGRQ VYLGGYDKED KAARAYDLAA  240
LKYWGPTTTT NFPISNYEKE LEEMKNMTRQ EFVASLRRKS SGFSRGASIY RGVTRHHQHG  300
RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVNSIANSN  360
LPIGGLNNKS KNCNDSASDS RSTDEERDHS GSSGMTFTSQ PAASSTLGFA INIKQDLSDY  420
WSNVLGYNDT GASLSSAKNP MFHHSPNGSG FQSPSGFCTG NGGNSVVRGS INNGLFNRGS  480
YVGQEQQESS AATNSHPLAT PIVLNNSDNY ESSSSGYGGN WNLAQSFQST YQTAKPSLSV  540
FQTPIFGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610705.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 isoform X1
SwissprotQ6PQQ31e-167AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1U8KX420.0A0A1U8KX42_GOSHI; AP2-like ethylene-responsive transcription factor AIL5 isoform X1
STRINGGorai.004G099100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115832833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-158AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]