PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 189aa MW: 21213.9 Da PI: 5.7643

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_38823_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.8	7.2e-20	58	110	2	56
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd +++ r +lg+f+taeeAa+a+++a+ +++g+ Cotton_A_38823_BGI-A2_v1.0 58 RYRGVRRRP-WGKYAAEIRDsTRQG--GPRLWLGTFDTAEEAARAYDRAAFSMRGH 110 69*****.******44334..4************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.248	58	117	IPR001471	AP2/ERF domain
CDD	cd00018	1.59E-29	58	118	No hit	No description
SMART	SM00380	1.3E-31	58	123	IPR001471	AP2/ERF domain
Pfam	PF00847	7.6E-15	58	110	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.4E-29	58	118	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.68E-21	58	118	IPR016177	DNA-binding domain
PRINTS	PR00367	2.0E-11	59	70	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-11	83	99	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MIVDLFWMFL LVYMGGQLCA FATEYKCGTE FDALFQVQTM PMEQNKMKKA GVAESSVRYR 60 GVRRRPWGKY AAEIRDSTRQ GGPRLWLGTF DTAEEAARAY DRAAFSMRGH SAILNFRDEH 120 IISSTTVNSP PSATPSSSSS SSSSSASAAS SSSYFFEHVK SKKDDERIVL ELECLDDKLL 180 EELLDFENK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-29	51	124	7	79	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ394934	1e-108	GQ394934.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1957 SSR marker DPL0287 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016747775.1	1e-106	PREDICTED: ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LTC5	4e-35	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A1U8P9F0	1e-105	A0A1U8P9F0_GOSHI; ethylene-responsive transcription factor ERF096-like
STRING	Gorai.001G176600.1	6e-74	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25048	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43410.1	2e-21	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]