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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cotton_A_38770_BGI-A2_v1.0 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
NAC |
| Protein Properties |
Length: 354aa MW: 39717.7 Da PI: 9.867 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_38770_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 176 | 1.1e-54 | 28 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83
lppGfrFhPtdeelvv+yLk+kv++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nrat+sgyW
Cotton_A_38770_BGI-A2_v1.0 28 LPPGFRFHPTDEELVVHYLKRKVASVPLPV-TIIAEVDLYKFDPWELPNKASFGEQEWYFFSPRDRKYPNGARPNRATTSGYW 109
79****************************.89***************999999***************************** PP
NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
katg+dk+++++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
Cotton_A_38770_BGI-A2_v1.0 110 KATGTDKPIITSnGNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 155
********999867788***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MKNYKENVKY CKLMESTDPS STSPHPQLPP GFRFHPTDEE LVVHYLKRKV ASVPLPVTII 60
AEVDLYKFDP WELPNKASFG EQEWYFFSPR DRKYPNGARP NRATTSGYWK ATGTDKPIIT 120
SNGNQKVGVK KALVFYGGKP PKGIKTNWIM HEYRLIDSNS NSKAQIVDLP NRRASLRLDD 180
WVLCRIYKKN NSQRLMEKDK NHSALPSFSH QNHGSLLEHE ENCYKRILTG DSMQNSSISQ 240
TAVSSSSKQS LPMAFLSATT TNSIPVKQAI AGPQYWNNEP NSTGSQSGKP RFHGDLNSIS 300
IASPDIDDTN SSFVSLLSHQ LPQNAPFNTS TIVGSLVNGV SRQQFILHGM NWSS
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-77 | 14 | 192 | 6 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-77 | 14 | 192 | 6 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-77 | 14 | 192 | 6 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-77 | 14 | 192 | 6 | 168 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-77 | 14 | 192 | 6 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 2e-77 | 14 | 192 | 6 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
