PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38643_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 282aa    MW: 30738.3 Da    PI: 9.7489
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38643_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.2e-19146179134
                        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                 Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Cotton_A_38643_BGI-A2_v1.0 146 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 179
                                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.02140176IPR000679Zinc finger, GATA-type
SMARTSM004015.3E-21140191IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-13141180No hitNo description
Gene3DG3DSA:3.30.50.101.5E-15144179IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.61E-13145173No hitNo description
PfamPF003207.0E-17146179IPR000679Zinc finger, GATA-type
PROSITE patternPS003440146171IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MTPAFLNPPP SPNFPFVELK EEPHHLQLFL SVNKYEGGSS ASDQQASSSS SSSSLQSTVE  60
DQKATNAQNS SFGRNEERNY ESSAEDNKNG ITVKWMSSKM RLMKKMMNSN SNCSSSSSSS  120
SSRGSTDHKF QYPVTGNGEA NAIRVCSDCN TTTTPLWRSG PRGPKSLCNA CGIRQRKARR  180
AMAAATAAAE SGAGVATDAA ILMKFKENNK EKKSRIGQFK KQQFKAQSDY NSPYSQQSQK  240
KLCFKELALS LSKNSALQSV FPRDVEDAAI LLMELSCGLI HS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644863.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLA0A1U8PUU01e-159A0A1U8PUU0_GOSHI; putative GATA transcription factor 22
TrEMBLA0A2P5XJT71e-159A0A2P5XJT7_GOSBA; Uncharacterized protein
STRINGGorai.010G101100.11e-150(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16433713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.19e-20GATA family protein