PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38617_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 482aa    MW: 54722.6 Da    PI: 8.1041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38617_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.87.9e-13317359754
                                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                  +Er+RR++iN+ +++Lr l+Pk +      K++  +iL+ A+eYI +L
  Cotton_A_38617_BGI-A2_v1.0 317 VMERNRRKKINDQLFKLRALVPKiS------KMDRTAILTDAIEYIGDL 359
                                 69*********************66......***************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.8E-1211165IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.08E-10308364No hitNo description
SuperFamilySSF474591.7E-14309375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.081310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-12316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-14317376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10317359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MRGFDRAVEW LRPFVDSKGW DFCVVWKLGD DPSRFIEWKD CCCSACFNVK VEKDESQKPF  60
CRDGHSQHSI RSKACEALSH FPFAISLYAG MHGEVAMSNQ PSWVNHGNPS GSQSSNVVVV  120
TLFTFFWPVS NAKQIEMGKY GSRIQVEEMT GTRVLIPVFS GLIELMPKDQ NLIELVTSQC  180
NAVLKQEITT GENYTKANLD KWYNLPFSIS LSTFVPRIEL IPPISDSNSH HSLDGSHSGS  240
SPSIEHPPFA SDSAYISQDE QFKKLIGTYY GTNRLRCSKN VPEQQARFPP DGNESIKDKM  300
RTTKQPAKEK FHSKNLVMER NRRKKINDQL FKLRALVPKI SKMDRTAILT DAIEYIGDLL  360
EEKKKLENEL MKIDEENCEK SNLELKSTLL DKSPKDNVSA VKPNQVSSSL AEMAKMEVHV  420
EVNQLTKREF LIKLYYEHKR GSFAKLMEGI DSLGLQVVDA NVTTFNGKVL SMFKVEVRLT  480
GW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017603435.10.0PREDICTED: transcription factor bHLH90 isoform X3
TrEMBLA0A2P5WL640.0A0A2P5WL64_GOSBA; Uncharacterized protein
STRINGGorai.009G337700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-54bHLH family protein