PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38432_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 615aa    MW: 67085.9 Da    PI: 7.0888
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38432_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.11.3e-1092516153374
                        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                 + ++e+A a+s+g++   +++Larl +la+ +g++ qRl+ +++ AL++rl++    + ++ p++e     s+e+++a++l++
  Cotton_A_38432_BGI-A2_v1.0 251 QKIMEVASAISDGKTDVLNEILARLAQLANAKGNSEQRLTECMLLALKSRLNS----VESSPPVTELF---SKEHATATHLLY 326
                                 789*************************************************9....55444555554...99********** PP

                        GRAS  86 evsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetger 164
                                 ++sP++k+++++aNqaIl+a+  +   +++HiiDfdi+qG+Q+ +Ll+aL++R +g p +++iT +++  +g  e+l+++g +
  Cotton_A_38432_BGI-A2_v1.0 327 DLSPCFKLGFMAANQAILDATLDQpscKKLHIIDFDIEQGGQYTTLLHALSERGRGNPaMVKITCIAD--NGGDERLKAVGFK 407
                                 ********************99888889*************************955554*********..77*********** PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 L+ +Ae++gv+++fnv+ + +l+dl+ e+L ++ +E laVnl+++l+r++desvs+e++rde+L+ vk+l P vv++veqe++
  Cotton_A_38432_BGI-A2_v1.0 408 LSLVAERFGVRLKFNVVPSLKLSDLSRESLGCELDEPLAVNLAFKLYRMPDESVSVENPRDELLRRVKRLAPCVVTIVEQEIN 490
                                 ****************8888*************************************************************** PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                 +n+++F+ r+ ea+ yy alf+s+e++++re++er+kvE+  l r+i n vaceg++r+er+e ++kWr+r+++aGF+  pls
  Cotton_A_38432_BGI-A2_v1.0 491 TNTAPFASRVGEAVGYYGALFESIESTFGRENSERVKVEEG-LLRKIANSVACEGRDRVERCEVFGKWRARMSMAGFELKPLS 572
                                 *****************************************.889************************************** PP

                        GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 e++a+++++ l+  ++ g++v+ee+g + +gW++r+L+++SaWr
  Cotton_A_38432_BGI-A2_v1.0 573 ESVAESMRARLNC-GNPGFTVKEENGGISFGWMGRTLTVASAWR 615
                                 ***********75.55***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.052223596IPR005202Transcription factor GRAS
PfamPF035144.6E-107251615IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MTSGFSGGGT EFYGRIAGGS VSNSGTMSNN QPTAPYGTHG IFMDPTSQIV NRAAPGFVGK  60
RTRADFNNHG LNDLNPRPVK PRNYQHAYPI SPLSPIDFSC NMLPDVTCNF SPSSSMSQRY  120
GVPVLQQLRR QQRPLGISSG ATIQAVNPGF SRAQYLNLVQ ARVVQAQDPE KKMMNQLQEL  180
EKQLLDDDNE EEGDAVSVIT NSNSEWSETI QPLISSSSPN KQIATSPTSS TTSSSSSTSS  240
VASPVSICSK QKIMEVASAI SDGKTDVLNE ILARLAQLAN AKGNSEQRLT ECMLLALKSR  300
LNSVESSPPV TELFSKEHAT ATHLLYDLSP CFKLGFMAAN QAILDATLDQ PSCKKLHIID  360
FDIEQGGQYT TLLHALSERG RGNPAMVKIT CIADNGGDER LKAVGFKLSL VAERFGVRLK  420
FNVVPSLKLS DLSRESLGCE LDEPLAVNLA FKLYRMPDES VSVENPRDEL LRRVKRLAPC  480
VVTIVEQEIN TNTAPFASRV GEAVGYYGAL FESIESTFGR ENSERVKVEE GLLRKIANSV  540
ACEGRDRVER CEVFGKWRAR MSMAGFELKP LSESVAESMR ARLNCGNPGF TVKEENGGIS  600
FGWMGRTLTV ASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4127261526375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5907633e-32JX590763.1 Gossypium hirsutum clone NBRI_GE25751 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484124.10.0PREDICTED: scarecrow-like protein 8 isoform X1
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A1U8NRZ70.0A0A1U8NRZ7_GOSHI; scarecrow-like protein 8
STRINGGorai.006G050200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-173SCARECROW-like 8