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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cotton_A_37899_BGI-A2_v1.0 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
HSF |
| Protein Properties |
Length: 357aa MW: 41465.8 Da PI: 6.2613 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_37899_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 112.3 | 3.3e-35 | 42 | 134 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84
Fl+k+y+i++d++++++isw + +nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+kv++++ weF+++
Cotton_A_37899_BGI-A2_v1.0 42 FLTKTYDIIDDSSTNNIISWGRANNSFIVWDPQAFSMTLLPRFFKHNNFSSFVRQLNTYGFRKVDTDR---------WEFANE 115
9********************999******************************************99.........****** PP
XXXXXXXXXXXXXXXXXXX CS
HSF_DNA-bind 85 sFkkgkkellekikrkkse 103
+F +g++ ll++i+r+k++
Cotton_A_37899_BGI-A2_v1.0 116 KFLRGQRPLLKNIRRRKTH 134
****************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MNPYGRVKEE FPGASSSYPA GMPSMVTAQQ MKGLHDAGPP PFLTKTYDII DDSSTNNIIS 60
WGRANNSFIV WDPQAFSMTL LPRFFKHNNF SSFVRQLNTY GFRKVDTDRW EFANEKFLRG 120
QRPLLKNIRR RKTHQPQASQ YALDHCVEVG RFGLDGEIDR LRRDKQVLMV ELVKLRQQQQ 180
NTRTCLLAVE KRLRKTEMKQ QQIMSFLAKA MQNPSFVQQL IQHNDRSKEL EEAITKKRQR 240
RIDQRSMDVE TSELLGAKTE PKCYDVAEFE VTELDKLVMN LQRLTGSQNH IELEHVEESK 300
DHGSKGKSLD EGFWDDLMDG DTHDIDQEIS VLDVEEEDEQ YLDVLVEQLR YLGSSSK
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 2ldu_A | 2e-24 | 37 | 133 | 12 | 122 | Heat shock factor protein 1 |
| 5d5u_B | 2e-24 | 33 | 133 | 17 | 131 | Heat shock factor protein 1 |
| 5d5v_B | 2e-24 | 33 | 133 | 17 | 131 | Heat shock factor protein 1 |
| 5d5v_D | 2e-24 | 33 | 133 | 17 | 131 | Heat shock factor protein 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
