PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37874_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 68aa    MW: 7802.1 Da    PI: 10.3849
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37874_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.51.5e-1710461450
                                HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                      SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                skRrng+ KKA+ELS+ C++e+a+iifs++ ++  +s
  Cotton_A_37874_BGI-A2_v1.0 10 SKRRNGLVKKAYELSIICNIEIALIIFSPSSRVSHFS 46
                                8******************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.79E-181065IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-71048IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.2871049IPR002100Transcription factor, MADS-box
PfamPF003196.0E-161045IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-121126IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-122647IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MIPTDKPPSS KRRNGLVKKA YELSIICNIE IALIIFSPSS RVSHFSGKKR IEDVLSRYIN  60
LLDQDRGW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625061.16e-29PREDICTED: agamous-like MADS-box protein AGL104
SwissprotQ1PFC23e-24AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLA0A2P5XU141e-29A0A2P5XU14_GOSBA; Uncharacterized protein
STRINGGorai.007G242000.12e-28(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.11e-26AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]