PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_37800_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 214aa MW: 24200.5 Da PI: 10.0904

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_37800_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Cotton_A_37800_BGI-A2_v1.0 70 FMCEICNKGFQRDQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	14.5	0.0001	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Cotton_A_37800_BGI-A2_v1.0 147 WKCEKCSKTYAVQSDWKAHSKIC 169 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.39E-7	69	92	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.1E-6	69	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	2.1E-5	70	92	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	70	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.031	70	92	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	240	112	142	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.1E-4	135	168	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.39E-7	142	167	No hit	No description
SMART	SM00355	110	147	167	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MDESMSNLTS TSGEFSASSG TVLYPPQQSF ASTNQAPAAA KKKRNLPGNP DPDAEVIALS 60 PKTLLATNRF MCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVVRKK VYVCPETTCV 120 HHDPARALGD LTGIKKHFCR KHGEKKWKCE KCSKTYAVQS DWKAHSKICG TREYRCDCGT 180 LFSSKRVVAS WSTIFRKGFE KQYSNGQREQ ENGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-21	143	185	3	45	Zinc finger protein JACKDAW
5b3h_F	4e-21	143	185	3	45	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	109	KLKQRTNKEVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017635510.1	1e-136	PREDICTED: protein indeterminate-domain 7-like
Swissprot	Q9LRW7	2e-98	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A0D2U9N2	1e-134	A0A0D2U9N2_GOSRA; Uncharacterized protein
STRING	Gorai.010G099600.1	1e-135	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	1e-101	indeterminate(ID)-domain 11

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]