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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_37794_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 281aa MW: 32119.1 Da PI: 4.7732 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.1 | 3.3e-13 | 24 | 94 | 18 | 96 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +p + + + + ++ t tl++ +g+ W+v l k++++++++kGW++F ++n + +g f++F ++g f vk+ Cotton_A_37794_BGI-A2_v1.0 24 IPATAI-VCPL---TPATATLRNCNGQCWQVDL--VKCDNKMYFRKGWRRFIDENSVVDGNFLIFNYVGGCVF--DVKI 94 444444.3333...46689**************..*********************************98888..4444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.42E-18 | 4 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-16 | 7 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.38E-13 | 9 | 95 | No hit | No description |
SMART | SM01019 | 1.0E-9 | 9 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.9E-11 | 23 | 91 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.378 | 37 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-10 | 155 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.39E-10 | 155 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.17 | 159 | 256 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MSNFEAKNFC KVYLATHSLH STLIPATAIV CPLTPATATL RNCNGQCWQV DLVKCDNKMY 60 FRKGWRRFID ENSVVDGNFL IFNYVGGCVF DVKIYEFDAC EKSIPYVVSE DEESESESES 120 EDDDSNSDDA MNDEEADSME VEDEEIHPED YVQHLNPYFV AKTTKSSQRM NELYIPTGIA 180 KDFGVSLEDG EKITFVDPYN RKSIGKVVKW KDQRTCIKGW RSVLNRNKVN LERDTCICEF 240 LLENGQQAEI GVQTKSIQVH VISRWKPSES GIKASKKQKQ K |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610008.1 | 0.0 | PREDICTED: B3 domain-containing protein At4g34400-like | ||||
Refseq | XP_017610009.1 | 0.0 | PREDICTED: B3 domain-containing protein At4g34400-like | ||||
Refseq | XP_017610010.1 | 0.0 | PREDICTED: B3 domain-containing protein At4g34400-like | ||||
TrEMBL | A0A1U8PE28 | 0.0 | A0A1U8PE28_GOSHI; B3 domain-containing protein At4g34400-like | ||||
STRING | Gorai.006G102500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22263 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 7e-12 | B3 family protein |