PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37794_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 281aa    MW: 32119.1 Da    PI: 4.7732
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37794_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.3e-1324941896
                                --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                          B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                                +p + +  + +   ++ t tl++ +g+ W+v l   k++++++++kGW++F ++n + +g f++F ++g   f   vk+
  Cotton_A_37794_BGI-A2_v1.0 24 IPATAI-VCPL---TPATATLRNCNGQCWQVDL--VKCDNKMYFRKGWRRFIDENSVVDGNFLIFNYVGGCVF--DVKI 94
                                444444.3333...46689**************..*********************************98888..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-184100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-16798IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-13995No hitNo description
SMARTSM010191.0E-9998IPR003340B3 DNA binding domain
PfamPF023626.9E-112391IPR003340B3 DNA binding domain
PROSITE profilePS5086311.3783798IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-10155253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-10155241IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.17159256IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSNFEAKNFC KVYLATHSLH STLIPATAIV CPLTPATATL RNCNGQCWQV DLVKCDNKMY  60
FRKGWRRFID ENSVVDGNFL IFNYVGGCVF DVKIYEFDAC EKSIPYVVSE DEESESESES  120
EDDDSNSDDA MNDEEADSME VEDEEIHPED YVQHLNPYFV AKTTKSSQRM NELYIPTGIA  180
KDFGVSLEDG EKITFVDPYN RKSIGKVVKW KDQRTCIKGW RSVLNRNKVN LERDTCICEF  240
LLENGQQAEI GVQTKSIQVH VISRWKPSES GIKASKKQKQ K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610008.10.0PREDICTED: B3 domain-containing protein At4g34400-like
RefseqXP_017610009.10.0PREDICTED: B3 domain-containing protein At4g34400-like
RefseqXP_017610010.10.0PREDICTED: B3 domain-containing protein At4g34400-like
TrEMBLA0A1U8PE280.0A0A1U8PE28_GOSHI; B3 domain-containing protein At4g34400-like
STRINGGorai.006G102500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2226322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.17e-12B3 family protein