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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_37610_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
NAC |
Protein Properties |
Length: 291aa MW: 33554.9 Da PI: 8.7915 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_37610_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 161.3 | 3.6e-50 | 15 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratks 80
l pGfrFhPtdeelv +yL++kve+k +++ ++ik+vdiyk++PwdLpk k+++ +ekewyfF++r +ky+++ r+nr+t s
Cotton_A_37610_BGI-A2_v1.0 15 LLPGFRFHPTDEELVGFYLRRKVEKKLFSI-DIIKHVDIYKHDPWDLPKvsKLSSgTEKEWYFFCRRGRKYRNSIRPNRVTGS 96
579***************************.99***************54544333677************************ PP
NAM 81 gyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
g+Wkatg dk+++s + +glkk+Lv+ykg+a kg+ktdW+mhe+rl
Cotton_A_37610_BGI-A2_v1.0 97 GFWKATGIDKPIYSVggFHDCIGLKKSLVYYKGSAGKGTKTDWMMHEFRL 146
**************9443455***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MEVMEKMISE DEDVLLPGFR FHPTDEELVG FYLRRKVEKK LFSIDIIKHV DIYKHDPWDL 60 PKVSKLSSGT EKEWYFFCRR GRKYRNSIRP NRVTGSGFWK ATGIDKPIYS VGGFHDCIGL 120 KKSLVYYKGS AGKGTKTDWM MHEFRLPPPS TTTLSSTNKD NLPEAEVWTL CRIFKRDVSS 180 RKFASDWQNK KNKQNTNTSA SSSRACSVES ENSLKVENFG VLDDKGIERK LQNDHFLGGN 240 QLFAATTQVL PSYLSFSNPN AADEYFGQEH WDELRPVVDY TIAKSLQYSD W
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 6e-49 | 15 | 182 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-49 | 15 | 182 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-49 | 15 | 182 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-49 | 15 | 182 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-49 | 15 | 182 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-49 | 15 | 182 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-49 | 15 | 182 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-49 | 15 | 182 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-49 | 15 | 182 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-49 | 15 | 182 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-49 | 15 | 182 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-49 | 15 | 182 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-49 | 15 | 182 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-49 | 15 | 182 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC847210 | 0.0 | KC847210.1 Gossypium hirsutum NAC domain protein NAC33 mRNA, complete cds. |
Publications
? help Back to Top |
- Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] - Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] - Shahnejat-Bushehri S, et al.
Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] - Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]
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