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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_37278_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 388aa MW: 43148.9 Da PI: 8.1104 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.2 | 1.9e-05 | 277 | 315 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L +++eYIk L Cotton_A_37278_BGI-A2_v1.0 277 VRKEKMGDRISALQQLVSPF-----GKTDTASVLSEVIEYIKFL 315 5778999***********98.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.47E-7 | 259 | 319 | No hit | No description |
PROSITE profile | PS50888 | 12.601 | 266 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-11 | 276 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-9 | 276 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MADEFNPGPN WWDRTAAPSS SSSSSSSSSV LNNSLGTFGG WNPEMADIKA RSPMDSISSS 60 SSSSVSAPDL HMMGLGLSSQ AMDWNQAFMR GDHKSKTSFK SMLEEHNLNA SNPNYHQEMM 120 GFKHQSSSQF SPCSSDSSII NNMDSTSLYG SPSTILQGLL GTENQTYENR SISYQYGMNN 180 NDPLLPNSWS KVPQFLKNSP PKNGQLHFSN NAPFWNPSAA TTAPMVDHRP PGFFPSFPTP 240 NFDEKPKNNI YEVKKNGNET SSKRPRNEMP SLPAFKVRKE KMGDRISALQ QLVSPFGKTD 300 TASVLSEVIE YIKFLHEQIN VLSTPYKKTR ATAQQQQQQN CEKSKDFEGF KHDLRSRGLC 360 LVPVSSTFPM THESTVDFWT PTFGGTFR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017648519.1 | 0.0 | PREDICTED: transcription factor bHLH123-like isoform X2 | ||||
Swissprot | Q8GXT3 | 1e-64 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A1U8MWB3 | 0.0 | A0A1U8MWB3_GOSHI; transcription factor bHLH123-like isoform X2 | ||||
STRING | Gorai.009G429100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4024 | 25 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 1e-56 | bHLH family protein |
Publications ? help Back to Top | |||
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