PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37193_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 576aa    MW: 61912.5 Da    PI: 5.5318
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37193_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-09367415355
                                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Cotton_A_37193_BGI-A2_v1.0 367 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 415
                                 58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-17362433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.44E-11362419No hitNo description
PROSITE profilePS5088815.485364414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16365431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-6367415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10370420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MDIGEKDKYE LGKRDEHNNI NYQAPVLSTD WQFGGANLTS AGMSLVPTTN PLAIGSSCAS  60
ASLVDSFGSS LWEHPSNSQN MGFCDISVQN GASSSNAMEI GKGLPNSLRT SIDRPFDMGW  120
NAASAMLKGG IFLPNTTGIL AQTLSQLPAD SAFIERAARF SSFNGGNFCD MVNSFGVPEP  180
MGLYARGVGL MQGPDDIFAV NGMKSVSVME SQKSKLDATE ATRDAGLRVE NRAKTSPLEN  240
ERKSESLMQP NEEVKQGTGG SGNESDEAEI SSRDGGQDEL STLDGTGGEP SAKGLSSKKR  300
KKSIQDAEID RAKGGQTSTK TAKDSPENQQ KQSMMINKTT GKQGSPASRP PKEEYIHVRA  360
RRGQATNSHS LAERVRREKI SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF  420
LSMKLATVNP RLDFSIEALL AKDIIQSRAG PSSTLGFSPD LSMGYPPLHP SQPGLVQAPL  480
PVIGNSSDVI HRALSSQLTS MTGGLKEPNQ HSNAWEDELH NVVQMNYGTS APSDSLDVNG  540
ITPVLLMSYL VGQMSSDLIE IDLMLLQGHD HPVIGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297301KKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468111e-102EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642969.10.0PREDICTED: transcription factor bHLH49-like isoform X1
RefseqXP_017642970.10.0PREDICTED: transcription factor bHLH49-like isoform X1
RefseqXP_017642971.10.0PREDICTED: transcription factor bHLH49-like isoform X1
RefseqXP_017642972.10.0PREDICTED: transcription factor bHLH49-like isoform X1
TrEMBLA0A0B0P7790.0A0A0B0P779_GOSAR; Transcription factor bHLH49-like protein
STRINGGorai.005G148300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-126bHLH family protein