![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_36873_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 538aa MW: 60250.2 Da PI: 6.6088 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.9 | 4.3e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Cotton_A_36873_BGI-A2_v1.0 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 8.0E-10 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.85E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 1.92E-16 | 6 | 55 | No hit | No description |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.0E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.4E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF13919 | 2.3E-12 | 279 | 364 | IPR028020 | ASX homology domain |
Pfam | PF16550 | 8.1E-9 | 298 | 365 | IPR032368 | UCH-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 538 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLTNYTPLHA RVEPEDYEDH 60 RASRLKIISI NENKEVKLLK RKSNHDKAIV VPDYNQGNRK FVDDDTSNRS SSGSAISNSE 120 SCAQFGCADA GDLTGPAQSN VWDSMVPSKK RTCVNRPKPS SVEKLTKDLY TILHEQQSSY 180 FSGSSEEDLL LESETPMVSV EIGHGSVLIR HPSSIAREEE SEASSLSVEN RQYSRNEAYS 240 YSSSFPAYND SKGIKFLGHG IERDKNSAGQ GMQHEQLNRD KSQHEKSLLM ESHNSPLCNI 300 DLNDILNYEE FVKYLTNEEQ QQLLQYLPPL DVANLPDSLE SMFESPQFKE NLCYFQQLLE 360 EGVFSVSVPG VKVEDCKTLK RLALFNLTKS HWVERRQTLK KCNRIQGSMN ARGPNAIASN 420 NFVTMKRSRN SQIQNFPESR TLKSPKRVIM KASCENKELI DNDGSCFSPR SLFALPSDRS 480 SLMLDSLHFV DESSDQDLLL DVPSNGSFPQ AELLHPALSF GQQASTSSSS AHPNPFHP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017623607.1 | 0.0 | PREDICTED: GATA transcription factor 26-like | ||||
Swissprot | Q8W4H1 | 1e-157 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | A0A1U8KTE4 | 0.0 | A0A1U8KTE4_GOSHI; GATA transcription factor 26-like | ||||
STRING | Gorai.004G193200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-142 | GATA transcription factor 26 |