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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cotton_A_36752_BGI-A2_v1.0 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
NAC |
| Protein Properties |
Length: 341aa MW: 38011.7 Da PI: 9.7062 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_36752_BGI-A2_v1.0 | genome | BGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 175.9 | 1.1e-54 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83
lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyW
Cotton_A_36752_BGI-A2_v1.0 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYW 96
79****************************.89***************8888999**************************** PP
NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
katg+dk+++++ ++++vg+kk Lvfy+g+ pkg kt+W+mheyrl
Cotton_A_36752_BGI-A2_v1.0 97 KATGTDKPIVTSnGNQKVGVKKALVFYRGKPPKGIKTNWIMHEYRL 142
*********99867788***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MESTDSSSAS AHPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVTIIAEV DLYKFDPWEL 60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPIVTSNG NQKVGVKKAL 120
VFYRGKPPKG IKTNWIMHEY RLIDNNSSTS KPQIVDLPNR KASLRLDDWV LCRIYKKNNT 180
QRPMETDKEY TMEGMLATQL PTSSHQNLNA LTSKATSYGS LLQHEDNFFE GILTEGMRSS 240
SNISQLAVSS SSKQNLPMAF PVKRTLPPQY WNEPSSTGSQ SGKRFQQGDI NCSSRGGNID 300
DTNSFVSLLN QLPQNTPFYT GSMVGSLGDG VSRQQFILPG S
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-75 | 15 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-75 | 15 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-75 | 15 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-75 | 15 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-75 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_B | 1e-75 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_C | 1e-75 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_D | 1e-75 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_A | 1e-75 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_B | 1e-75 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_C | 1e-75 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_D | 1e-75 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
| 4dul_A | 1e-75 | 15 | 180 | 17 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 1e-75 | 15 | 180 | 17 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}. |
| UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
