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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_36596_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CO-like | ||||||||
Protein Properties | Length: 408aa MW: 44148 Da PI: 4.9423 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.3 | 9.7e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++++ +C+++ +lC +C + H+ H++ Cotton_A_36596_BGI-A2_v1.0 4 ICDFCGDQLSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 7*******9*********************65677777766 PP | |||||||
2 | zf-B_box | 20.7 | 8.6e-07 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C + ++ lC++C +H g H++++ Cotton_A_36596_BGI-A2_v1.0 46 LLCERCNSQPAFVRCAEERVSLCQNCDWIGH-GastsnstHKRQT 89 57*****************************.5578888888776 PP | |||||||
3 | CCT | 67.8 | 2.8e-23 | 351 | 394 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktRkF+K++rY+sRKa+A+ R+RvKGrFvk+ Cotton_A_36596_BGI-A2_v1.0 351 RSNAVMRYKEKKKTRKFDKQVRYASRKATADVRKRVKGRFVKAG 394 899**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.542 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.4E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.98E-6 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 8.816 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.97E-5 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.68 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.3E-17 | 351 | 393 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.398 | 351 | 393 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MGYICDFCGD QLSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPAFVRC 60 AEERVSLCQN CDWIGHGAST SNSTHKRQTI NCYSGCPSSS ELSSMWSFFP QSPPAGESSC 120 EQELGLMCIT ENIERTSWGA IENTINQNSA GVAEVNHDSN TNKGTGWGGT SSIPDLRSMP 180 RVLDQPPGPT GASLPKCPGI CEDDLYDDFN MDEVDLNLEN YEELFGVTLN HSEELLENGG 240 IDSLFGTKDM AAADSNCQGA VAAEGSSVGL INAIQPACSN AASADSMMSS KTDSILCFTA 300 RQAHSSVSFS GLTGESSAGD YQDCGASSML LMGEPSWCPP CAESSFQSAT RSNAVMRYKE 360 KKKTRKFDKQ VRYASRKATA DVRKRVKGRF VKAGDAYDYD PLNHTRSC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017614687.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Swissprot | Q9SSE5 | 1e-151 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A2P5VT88 | 0.0 | A0A2P5VT88_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G190000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-137 | CONSTANS-like 9 |