PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36552_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 462aa    MW: 51795.7 Da    PI: 7.7867
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36552_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13291336454
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 +h e+Er RR+++N++f  Lr+++P+       K++Ka+ L  Av YIk+L
  Cotton_A_36552_BGI-A2_v1.0 291 NHVEAERLRREKLNHRFYALRSVVPTV-----SKMDKASLLSDAVAYIKEL 336
                                 799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.3E-4821198IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.199287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17289353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16290348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-13290340No hitNo description
PfamPF000101.0E-10291336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-15293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00987400457No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MSSSSSSSMI SFGQDAPPPT LQQRLQFIVQ SRPEWWVYSI FWQASRDAQG HLVLSWGDGY  60
FQGTKGFAGK SGNKLSQPRF GRRRSGKDIQ SVFCEEIDIE RIVDGDVTDY EWYYTVSVNR  120
SFAIGDDILG KAFGSGSYIW LCGDQELQLY ECERVTEARM RGIQTIVFLS TSFGVVELGS  180
SEMIQENWGL VQLAKSIFGS EINCLGSKHP GLESQLQMST QIPFLDFGKV ASDQKEWILD  240
DRKQQIEAKK DTSGLLRRSS SDSGADSEMD FSVGSKKRGR KSGTGKTTPS NHVEAERLRR  300
EKLNHRFYAL RSVVPTVSKM DKASLLSDAV AYIKELRSKI DKLDVKLKVQ SQKSKLNAIN  360
VSNNQRNAST FNCIRPTYDY GPNTMEVDVK IVGSEAMIRV QCPDINYPAA RLMDALRDLE  420
LHVHHASVST VNELVLQDVV VILPAGFISE EMLRTAIFQR CS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-29201988192Transcription factor MYC3
4rqw_B8e-29201988192Transcription factor MYC3
4rs9_A8e-29201988192Transcription factor MYC3
4yz6_A8e-29201988192Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625146.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1U8KER60.0A0A1U8KER6_GOSHI; transcription factor MYC2-like
STRINGGorai.004G129600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.17e-65bHLH family protein