PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36494_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BBR-BPC
Protein Properties Length: 310aa    MW: 34656.9 Da    PI: 9.2565
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36494_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind315.31.9e-96313101301
                   GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd..........maflqrdkalae 69 
                                 md+d+ + rn+gyyep+  +k +lgl+lm   aerd+k+    r+ n  l+ + +a+++rd          m++  rd+++++
  Cotton_A_36494_BGI-A2_v1.0  31 MDEDALNMRNWGYYEPS--FKGHLGLHLM---AERDKKPfipaRDPNN-LMVTTNAFHPRDcivseappipMQY-VRDTWISQ 106
                                 99**9999*******99..*******998...5899999999888888.999999*******************.9******* PP

                   GAGA_bind  70 rnkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkk 152
                                         ++kl+++l+  +      ++++++l++t+ ++s+    +p l ++a   r+e+   +   +e+++ +ke  ++kk
  Cotton_A_36494_BGI-A2_v1.0 107 --------REKLFNMLPPVT------APNYDILPETSATHSMPI-WQPSLPPDAST-RDER--VVGR-VEEPPASKEGVQSKK 170
                                 ........789999999666......47899*********9998.56666666555.3333..3344.446788888888899 PP

                   GAGA_bind 153 rqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235
                                 rq + +pk++kakk++k    +k+++     ++++k  kks+d+++ng ++D+s++ +PvCsCtG+ +qCY+WG+GGWqSaCC
  Cotton_A_36494_BGI-A2_v1.0 171 RQGGGDPKTPKAKKPRK----PKDNT-----NSSVKPAKKSMDIAINGYDMDISSISIPVCSCTGTAQQCYRWGCGGWQSACC 244
                                 999*********99999....22222.....23578999******************************************** PP

                   GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                 tt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaae yd+snp+DL++hWA+HGtnkfv ir
  Cotton_A_36494_BGI-A2_v1.0 245 TTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAENYDFSNPIDLRTHWARHGTNKFVIIR 310
                                 ****************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.2E-15131310IPR010409GAGA-binding transcriptional activator
PfamPF062175.3E-10331310IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGFEACNICI LDKCGELGTS LDLKVSMFLS MDEDALNMRN WGYYEPSFKG HLGLHLMAER  60
DKKPFIPARD PNNLMVTTNA FHPRDCIVSE APPIPMQYVR DTWISQREKL FNMLPPVTAP  120
NYDILPETSA THSMPIWQPS LPPDASTRDE RVVGRVEEPP ASKEGVQSKK RQGGGDPKTP  180
KAKKPRKPKD NTNSSVKPAK KSMDIAINGY DMDISSISIP VCSCTGTAQQ CYRWGCGGWQ  240
SACCTTNVSM YPLPMSTKRR GARIAGRKMS QGAFKKVLEK LAAENYDFSN PIDLRTHWAR  300
HGTNKFVIIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9644401e-109JX964440.1 Gossypium hirsutum clone NBRI_TRANS-709 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638341.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1
RefseqXP_017638342.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X2
SwissprotQ9SKD05e-97BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A1U8HWS70.0A0A1U8HWS7_GOSHI; protein BASIC PENTACYSTEINE2-like
STRINGGorai.005G154200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.33e-97basic pentacysteine 2