PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Cotton_A_36420_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 254aa MW: 28877.4 Da PI: 7.1787

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_36420_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.6	1.6e-42	5	135	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk 79 +pGfrF Pt+eelv++yL++k+e ++ +++vi+ v+iy+++PwdLp ++++ ++w+fF++r++++a+g +++r t+ Cotton_A_36420_BGI-A2_v1.0 5 APGFRFYPTEEELVSFYLHHKLEMERedlnRLMDRVIPIVNIYEFNPWDLPlYLCHKDPEQWFFFIPRQESEARGGKPKRRTT 87 69******************99995653223347***********656666778****************9 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +gyWkatg+ v++++++ +g+k+t+vfykgrap+g kt+W m+ey+ Cotton_A_36420_BGI-A2_v1.0 88 TGYWKATGSPGFVYCSGNRPIGVKRTMVFYKGRAPNGIKTEWKMNEYK 135 ***********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-45	4	162	IPR003441	NAC domain
PROSITE profile	PS51005	46.315	4	162	IPR003441	NAC domain
Pfam	PF02365	3.7E-22	6	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEDIAPGFRF YPTEEELVSF YLHHKLEMER EDLNRLMDRV IPIVNIYEFN PWDLPLYLCH 60 KDPEQWFFFI PRQESEARGG KPKRRTTTGY WKATGSPGFV YCSGNRPIGV KRTMVFYKGR 120 APNGIKTEWK MNEYKAIEQG ASSISATPTL RHEFSLCRVY KKSKCLRSFD RQPPVGGVQI 180 IKPNAAAHQG EATAGEAASG YHKSQQMAGS PESSSSEDHG NPSQTGASND SSATVFNYDE 240 LFWNLDGFWE SQIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-32	4	162	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-32	4	162	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-32	4	162	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-32	4	162	17	165	NO APICAL MERISTEM PROTEIN
4dul_A	3e-32	4	162	17	165	NAC domain-containing protein 19
4dul_B	3e-32	4	162	17	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016739504.1	0.0	PREDICTED: NAC domain-containing protein 90-like isoform X2
Swissprot	Q9FMR3	4e-64	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1U8NNI5	0.0	A0A1U8NNI5_GOSHI; NAC domain-containing protein 90-like isoform X2
STRING	Gorai.009G399900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10159	10	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-66	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]