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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_36235_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
NAC |
Protein Properties |
Length: 320aa MW: 35764.5 Da PI: 9.1724 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_36235_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 177.5 | 3.6e-55 | 11 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83
lppGfrFhPtdeel+++yL +k+++ +++ ++i++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyW
Cotton_A_36235_BGI-A2_v1.0 11 LPPGFRFHPTDEELITFYLVNKISDANFTG-RAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYW 92
79*************************999.89***************99999****************************** PP
NAM 84 katgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
k+tgkdke++++ ++elvg+kktLvfy+grap+gekt+Wvmheyr+
Cotton_A_36235_BGI-A2_v1.0 93 KTTGKDKEIFNSnsrvTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 141
***********966666667***************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MEGDKGKEET LPPGFRFHPT DEELITFYLV NKISDANFTG RAIADVDLNK CEPWDLPGKA 60 KMGEKEWYFF SLRDRKYPTG VRTNRATNTG YWKTTGKDKE IFNSNSRVTS ELVGMKKTLV 120 FYRGRAPRGE KTNWVMHEYR IHSKSSFRTN KEEWVVCRVF QKSAGLKKYP SASNQSRAAV 180 NPYNLDIGGG SLLPMMQAEN YHLSMGAELS RVLRGGPSCS ANLPIPSQIN YPVPGGFTIS 240 GLNLNLGGGS TQPVMRPMQP PPPPPMLQHQ DVTPSLMNTA TFGAEGGYGA EITTQNANGP 300 TNRYLSMDHC MDLDNYWPTY
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 2e-55 | 2 | 168 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-55 | 2 | 168 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-55 | 2 | 168 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-55 | 2 | 168 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-55 | 2 | 168 | 11 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-55 | 2 | 168 | 11 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-55 | 2 | 168 | 11 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-55 | 2 | 168 | 11 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-55 | 2 | 168 | 11 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-55 | 2 | 168 | 11 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-55 | 2 | 168 | 11 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-55 | 2 | 168 | 11 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-55 | 2 | 168 | 8 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-55 | 2 | 168 | 8 | 171 | NAC domain-containing protein 19 |
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