PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36210_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 184aa    MW: 19545.7 Da    PI: 4.7861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36210_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-182676155
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                + ykGVr+++ +g+Wv+eIr+p+    +  r++lg+f tae+Aa a++ a+++l+g
  Cotton_A_36210_BGI-A2_v1.0 26 PVYKGVRRRS-SGKWVSEIREPR----KpNRIWLGTFPTAEMAAIAYDVAALALKG 76
                                68*****888.8*********94....478***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-122676IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-212786IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-302786IPR001471AP2/ERF domain
PROSITE profilePS5103222.7482784IPR001471AP2/ERF domain
SMARTSM003803.8E-342790IPR001471AP2/ERF domain
CDDcd000181.30E-312886No hitNo description
PRINTSPR003673.9E-82839IPR001471AP2/ERF domain
PRINTSPR003673.9E-85066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MHYSKPNKTS NASTSGGSSS ATGRHPVYKG VRRRSSGKWV SEIREPRKPN RIWLGTFPTA  60
EMAAIAYDVA ALALKGQDAE LNFPNSAASL PVPASTSPRD IQAAATSAAT ALGAANDALR  120
NNSIAPPEKP SMADDFVDED LIFDMPNVLS NMAEGMLLSP PCFDADQPPA NNGGDDDENL  180
WKFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-171786474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6158148e-61JX615814.1 Gossypium hirsutum clone NBRI_GE60034 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017639795.11e-132PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR03e-55ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0D2NNT51e-128A0A0D2NNT5_GOSRA; Uncharacterized protein
STRINGGorai.002G159400.11e-129(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.15e-44ERF family protein