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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_36024_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
BBR-BPC |
Protein Properties |
Length: 286aa MW: 32355.1 Da PI: 10.1727 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_36024_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 348.2 | 1.8e-106 | 5 | 286 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaer 70
mddd+ + rn+gyyep+ +k +lglqlmss+aerd+k r+ nl + +++aa+++rd m++ rd ++++
Cotton_A_36024_BGI-A2_v1.0 5 MDDDALNMRNWGYYEPS--FKGHLGLQLMSSMAERDTKSfipmRDPNL-MVTPNAAFHPRDcivseapipMNY-VRDRWISQ- 82
9***9999*******99..*******************99999*****.************************.9*******. PP
GAGA_bind 71 nkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkk 152
++k++++l+ ++++++l++t+ ++sl l++s+ +r+e+ + + e+ + +ke+ + kk
Cotton_A_36024_BGI-A2_v1.0 83 -------REKFFNMLP-------GISPNYGILPETSAAHSLPI-----LQPSPNSsTRDERV--VGRV-EESPATKESVELKK 143
.......789*****9.......345789**********9988.....88888874444443..3343.35667777777788 PP
GAGA_bind 153 rqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235
rq+++ pk++k+kk++k +k++++++ +r+k kks+d+ +ng ++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCC
Cotton_A_36024_BGI-A2_v1.0 144 RQSESAPKTPKTKKPRK----PKDNTNSSV--QRVKPAKKSMDIKINGYDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACC 220
99999999999999988....333344444..689************************************************ PP
GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
tt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaae y+++np+DL++hWA+HGtnkfvtir
Cotton_A_36024_BGI-A2_v1.0 221 TTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAENYNFNNPIDLRTHWARHGTNKFVTIR 286
*****************************************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009723 | Biological Process | response to ethylene |
GO:0050793 | Biological Process | regulation of developmental process |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 286 aa
Download sequence Send
to blast |
MYSFMDDDAL NMRNWGYYEP SFKGHLGLQL MSSMAERDTK SFIPMRDPNL MVTPNAAFHP 60 RDCIVSEAPI PMNYVRDRWI SQREKFFNML PGISPNYGIL PETSAAHSLP ILQPSPNSST 120 RDERVVGRVE ESPATKESVE LKKRQSESAP KTPKTKKPRK PKDNTNSSVQ RVKPAKKSMD 180 IKINGYDMDI SGIPIPVCSC TGTPQQCYRW GCGGWQSACC TTNVSMYPLP MSTKRRGARI 240 AGRKMSQGAF KKVLEKLAAE NYNFNNPIDL RTHWARHGTN KFVTIR
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 142 | 156 | KRQSESAPKTPKTKK |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |