PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36024_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BBR-BPC
Protein Properties Length: 286aa    MW: 32355.1 Da    PI: 10.1727
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36024_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind348.21.8e-10652861301
                   GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaer 70 
                                 mddd+ + rn+gyyep+  +k +lglqlmss+aerd+k     r+ nl + +++aa+++rd         m++  rd ++++ 
  Cotton_A_36024_BGI-A2_v1.0   5 MDDDALNMRNWGYYEPS--FKGHLGLQLMSSMAERDTKSfipmRDPNL-MVTPNAAFHPRDcivseapipMNY-VRDRWISQ- 82 
                                 9***9999*******99..*******************99999*****.************************.9*******. PP

                   GAGA_bind  71 nkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkk 152
                                        ++k++++l+         ++++++l++t+ ++sl       l++s+   +r+e+   +  + e+ + +ke+ + kk
  Cotton_A_36024_BGI-A2_v1.0  83 -------REKFFNMLP-------GISPNYGILPETSAAHSLPI-----LQPSPNSsTRDERV--VGRV-EESPATKESVELKK 143
                                 .......789*****9.......345789**********9988.....88888874444443..3343.35667777777788 PP

                   GAGA_bind 153 rqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235
                                 rq+++ pk++k+kk++k    +k++++++   +r+k  kks+d+ +ng ++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCC
  Cotton_A_36024_BGI-A2_v1.0 144 RQSESAPKTPKTKKPRK----PKDNTNSSV--QRVKPAKKSMDIKINGYDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACC 220
                                 99999999999999988....333344444..689************************************************ PP

                   GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                 tt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaae y+++np+DL++hWA+HGtnkfvtir
  Cotton_A_36024_BGI-A2_v1.0 221 TTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAENYNFNNPIDLRTHWARHGTNKFVTIR 286
                                 *****************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012266.4E-1715286IPR010409GAGA-binding transcriptional activator
PfamPF062177.1E-1145286IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MYSFMDDDAL NMRNWGYYEP SFKGHLGLQL MSSMAERDTK SFIPMRDPNL MVTPNAAFHP  60
RDCIVSEAPI PMNYVRDRWI SQREKFFNML PGISPNYGIL PETSAAHSLP ILQPSPNSST  120
RDERVVGRVE ESPATKESVE LKKRQSESAP KTPKTKKPRK PKDNTNSSVQ RVKPAKKSMD  180
IKINGYDMDI SGIPIPVCSC TGTPQQCYRW GCGGWQSACC TTNVSMYPLP MSTKRRGARI  240
AGRKMSQGAF KKVLEKLAAE NYNFNNPIDL RTHWARHGTN KFVTIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142156KRQSESAPKTPKTKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633876.10.0PREDICTED: protein BASIC PENTACYSTEINE2
SwissprotQ9SKD01e-109BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A2P5WKK90.0A0A2P5WKK9_GOSBA; Uncharacterized protein
STRINGGorai.002G171200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-109basic pentacysteine 2