PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_35683_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 261aa MW: 28560.6 Da PI: 7.7269

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_35683_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00021	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Cotton_A_35683_BGI-A2_v1.0 80 FSCNYCQRKFYSSQALGGHQNAH 102 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.7E-6	76	107	No hit	No description
PROSITE profile	PS50157	11.427	80	107	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MEPPRSSEPS LSETSTVNSV SNGLKDDDNY DLVLDLSLSN KDDSKPELNL IECFKVTVSS 60 DNHQDCLGTP QGNETEPRVF SCNYCQRKFY SSQALGGHQN AHKRERTLAK RGQQRVVVGL 120 GGDGGGGGGA SFAAFGHPNT HSGRYSTMAF LPLHGSFNKS LGIQVHSMIH KPSIPSSTHI 180 YGHNEWSRRP IHQTPAIGHL SLENFHLGSS TNNGTAARFE SSVRKFGPST EGMKGYWWDS 240 SSVNPFNTKQ DELKLDLSLK L

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269\|PubMed:24808098, ECO:0000305\|PubMed:8980531}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269\|PubMed:10794528}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527672	0.0	HQ527672.1 Gossypium herbaceum clone NBRI_D_4982 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017645293.1	0.0	PREDICTED: zinc finger protein 1-like
Swissprot	Q42485	2e-40	ZFP1_ARATH; Zinc finger protein 1
TrEMBL	A0A1U8M707	0.0	A0A1U8M707_GOSHI; zinc finger protein 1-like
TrEMBL	A0A2P5YVK7	0.0	A0A2P5YVK7_GOSBA; Uncharacterized protein
STRING	Gorai.010G222700.1	1e-162	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1893	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	1e-43	zinc-finger protein 1

Publications ? help Back to Top
Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098]