PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35104_BGI-A2_v1.0
Common NameF383_29309
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 241aa    MW: 27398 Da    PI: 5.9363
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35104_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.5e-134490354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                ++h+++E+rRRdriN  ++ Lrel+P +      K++Ka+ L+ Ave +k+L
  Cotton_A_35104_BGI-A2_v1.0 44 TSHSQAEKRRRDRINAQLSALRELIPMS-----HKMDKAALLKCAVEQVKDL 90
                                68*************************8.....6*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9194190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-144297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.30E-114493No hitNo description
PfamPF000101.9E-104490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-144493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-124796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00648140175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MENYYKSSSW TDFSDKVSND SSFIVPWTIP VEEIAEDKAT TVYTSHSQAE KRRRDRINAQ  60
LSALRELIPM SHKMDKAALL KCAVEQVKDL KRKAAEISKA FNIPTEMDEV TVDWDRPQDI  120
NPNGTRQGND SKDKIFIRAS VCCDDRPEVF TELIKILKGL RLNTIKADIS SVGGRMKCNF  180
ILCYNSIDEE EEEGEGVSPT TLKQSLDVVL SRIASSSDVS DYRIRSKRQR LFLLSQFTQS  240
S
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6164450.0JX616445.1 Gossypium hirsutum clone NBRI_GE61128 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614715.11e-179PREDICTED: transcription factor bHLH51-like
TrEMBLA0A0B0MQR71e-171A0A0B0MQR7_GOSAR; Transcription factor bHLH51-like protein
STRINGGorai.012G078100.11e-108(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-52bHLH family protein