PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34998_BGI-A2_v1.0
Common NameF383_35547
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 304aa    MW: 33577.1 Da    PI: 6.7886
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34998_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.33.8e-17196230135
                        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                 C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Cotton_A_34998_BGI-A2_v1.0 196 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 230
                                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.5E-8116282IPR016679Transcription factor, GATA, plant
SMARTSM004013.6E-16190244IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.426190226IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.1E-14191227IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.42E-14192253No hitNo description
CDDcd002025.16E-13195242No hitNo description
PfamPF003207.1E-15196230IPR000679Zinc finger, GATA-type
PROSITE patternPS003440196221IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEAADFFVGG YYDGAAGDGF LPEQKLPENF TVDDLLDFSN EDAIISDCFL DNVAANSTDS  60
STVTTGGDNH FSSANVPHHS QFSGELCVPY DDLAELEWLS NFVEDSFSTD QNLQSNLQIL  120
ATSKSPTPES SSSSTRSDNN LIFQHDIPHP AKARSKRSRA PPCDWSTRVL HLIPKSMGQK  180
KRENSNANPE SSGRKCLHCA AEKTPQWRTG PMGPKTLCNA CGVRYKSGRL VSEYRPAASP  240
TFVSTKHSNS HRKVLELRRQ KDLQRAQHQQ FLSQTSIFGI SNGGGGTDDF LIHHHGVPHF  300
RHMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5913391e-102JX591339.1 Gossypium hirsutum clone NBRI_GE26443 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622589.10.0PREDICTED: GATA transcription factor 4-like
SwissprotP697811e-75GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A0B0N6Q60.0A0A0B0N6Q6_GOSAR; GATA transcription factor
TrEMBLA0A2P5WRY50.0A0A2P5WRY5_GOSBA; GATA transcription factor
STRINGGorai.003G062900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-73GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]