PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34746_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 420aa    MW: 45933 Da    PI: 5.8744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34746_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.1e-053123491254
                                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Cotton_A_34746_BGI-A2_v1.0 312 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 349
                                 677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.992300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.35E-6310353No hitNo description
SuperFamilySSF474591.31E-11310362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-9314357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MLTGCSLPPS TGVVDMGNFG YDTDMVDIRA RTRYYEESTK NPVSGVSSTV FQGHLHHQTD  60
SDSGGTSSSL LIDSTLQMMG FGLPSSTTSD WNLSLLRSNG RTEFYNSILQ EDIDSRLNYR  120
QETGMSSVQI HNYWSPKSHS SPGKDSSIPV VEPIDQDISL NSVTSSGNST PTCQGLPAGF  180
PMASSSYGYP STLLHSLFQS DPQTSEQQSL FNNRSINYIS SEKSSWPKQQ PSSLRFSNNT  240
PFWNASATGI NDVKSGFLPS PASQFLVQTF EEKANCPSST TKTNSTEAGK SASGMKRPKL  300
ESPSPLPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH EAIEYIKFLH DQVNVLSTPY  360
MKQAVDSIQQ ENIDNLKDPD EPKQALKSRG LCLVPISSTF PVTNETTADI WTPTFGGTLR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1472302e-54EF147230.1 Populus trichocarpa clone WS01229_K02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645237.10.0PREDICTED: transcription factor bHLH112-like
TrEMBLA0A1U8PRV60.0A0A1U8PRV6_GOSHI; transcription factor bHLH112-like
STRINGGorai.010G147100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.16e-59bHLH family protein