 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cotton_A_34560_BGI-A2_v1.0 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
Family |
NAC |
Protein Properties |
Length: 266aa MW: 30096.9 Da PI: 4.6317 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_34560_BGI-A2_v1.0 | genome | BGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 70 | 6.2e-22 | 11 | 133 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksg 81
p+GfrF Pt ee++++yL++ ++g++++ v++e+diy + ePw++ ++++ e + +k +k ++++r +r++ +g
Cotton_A_34560_BGI-A2_v1.0 11 PVGFRFLPTKEEIICDYLQPFIKGDPIPS-GVMEELDIYGAnrEPWNIF---DQDSAESlWVITKLKK--KSKSRIERTAGDG 87
89**************************9.99******976559****5...2333344134444433..3578********* PP
NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
W ++ ++ s +ge++g k + + +++++k ++ +W+mhe++l
Cotton_A_34560_BGI-A2_v1.0 88 CWLQQYIKEVKNSDGGEVIGYDKYFKYSRKKSQK-SNGQWIMHEFSL 133
***998866555669999*********9766666.89********98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 266 aa
Download sequence Send
to blast |
MSTVRPKLEI PVGFRFLPTK EEIICDYLQP FIKGDPIPSG VMEELDIYGA NREPWNIFDQ 60 DSAESLWVIT KLKKKSKSRI ERTAGDGCWL QQYIKEVKNS DGGEVIGYDK YFKYSRKKSQ 120 KSNGQWIMHE FSLKDQEALG LSDFVICEIK DAAVVSPDYE ECEGEINKNK KRKLMEVPST 180 STNDFAFVPM GNQAFEYMAP EAGGLSPLPP FTACLNQQPN PWTSAGVGGN LGVPYYNSHH 240 LEEAREDVNA NLYLTLQELD NFLNSD
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | JX600276 | 2e-37 | JX600276.1 Gossypium hirsutum clone NBRI_GE38043 microsatellite sequence. |