PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34319_BGI-A2_v1.0
Common NameF383_35307
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 471aa    MW: 50504.9 Da    PI: 8.6313
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34319_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.2e-114468327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                                 ++C +++rtG+C yG++C+F+H++
  Cotton_A_34319_BGI-A2_v1.0 44 KANCIYYLRTGFCGYGSKCRFNHPR 68
                                579********************96 PP
2zf-CCCH35.12.3e-1190114327
                                 S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                 ++ C++++r GtCk+G++Ck++H++
  Cotton_A_34319_BGI-A2_v1.0  90 QPVCQYYMRKGTCKFGSSCKYHHPK 114
                                 689********************96 PP
3zf-CCCH36.48.7e-12135159226
                                 -S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                 ++++C++f +tG+Ck+G++CkF+H+
  Cotton_A_34319_BGI-A2_v1.0 135 GEKECSYFVKTGQCKFGATCKFHHP 159
                                 7899********************9 PP
4zf-CCCH35.61.6e-11296321227
                                 -S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                 ++++C+++++t  CkyG++Ck++H+p
  Cotton_A_34319_BGI-A2_v1.0 296 GQPECQYYMKTRNCKYGSSCKYHHPP 321
                                 5799********************97 PP
5zf-CCCH29.61.2e-09344366426
                                 ---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                 ++C ++++ G Ck+G  CkF H 
  Cotton_A_34319_BGI-A2_v1.0 344 PPCIHYSQHGVCKFGVACKFDHH 366
                                 89********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-44168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3244169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-64370IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-94468IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-54768IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-787114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.15587115IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-990114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-690114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-492113IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-6133160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.126133161IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9135159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6135160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4139158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3294322IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-5294321IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-9297321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5298322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4300321IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.267340368IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-7343366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5344370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MERDPESDPQ PEWAAPGPET GLEEPVWRLG LGGESESYPE RPNKANCIYY LRTGFCGYGS  60
KCRFNHPRDR TGVMAAARVD VGEYPERVGQ PVCQYYMRKG TCKFGSSCKY HHPKQGGDSI  120
GPVPLNYLGY PLRPGEKECS YFVKTGQCKF GATCKFHHPV LPAVEVPPPS PTSQVAPLPT  180
PLSAPTLYPR TQSPSGPLSQ QYGVVMASSP LMPGSYVQGP YGQLLISPGM VSFPSWNPYP  240
AAVSVGTQPA VGSNSMFGVT PLSPSAPAYT RSYQPTRSSV VPSSSIQERS FPERRGQPEC  300
QYYMKTRNCK YGSSCKYHHP PEVIAPKVDV ILNPLGLPIR QGAPPCIHYS QHGVCKFGVA  360
CKFDHHMGTL SYSPSASSLT DMPVAPYPFG STGGTLAPSS SSSDLRPEQL SRSNKESAPP  420
IMSSSVSASS ESVGSIFSKG GLVHHSIAQQ SSQSSFGSGN NSSTTKAQAS S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613872.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X1
RefseqXP_017613877.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X1
SwissprotQ6NPN31e-155C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A0B0N7N30.0A0A0B0N7N3_GOSAR; Uncharacterized protein
STRINGGorai.011G188400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-151C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]