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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_34282_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 147aa MW: 15779.2 Da PI: 10.4103 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.1 | 6.8e-20 | 10 | 44 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++ Cotton_A_34282_BGI-A2_v1.0 10 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRR 44 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-16 | 3 | 57 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.585 | 4 | 40 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.9E-16 | 4 | 56 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.23E-14 | 4 | 44 | No hit | No description |
CDD | cd00202 | 1.86E-13 | 9 | 57 | No hit | No description |
Pfam | PF00320 | 7.8E-18 | 10 | 44 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 10 | 35 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MMSESSKKFC TDCKTTKTPL WRGGPAGPKS LCNACGIRYR KKRRAMLGLN KGIEKKKEIS 60 HSPSSDSNSS IAPTNDGGGE NLSANLNGLS ESVKMSLFAL GSEVLFQTSS SLSGVVKKQR 120 CQRRRKLGEE EQAAISLMAL SCGTVFA |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX612525 | 1e-34 | JX612525.1 Gossypium hirsutum clone NBRI_GE55096 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618886.1 | 1e-103 | PREDICTED: GATA transcription factor 16-like | ||||
TrEMBL | A0A2P5QYC9 | 4e-79 | A0A2P5QYC9_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.013G127900.1 | 3e-79 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16911 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 3e-23 | GATA transcription factor 15 |